LOC_Os05g50550

Expression Profile

RGAP LOCUS ID LOC_Os05g50550
RAP-DB ID Os05g0582300
Function polyprenyl synthetase, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization chlo
score 12

2) CELLO Prediction
localization Chloroplast
score 2.084

3) NUCPRED Prediction
localization Non Nuclear
score 0.49

4) Y-Loc Prediction
localization Chloroplast
score 9
confidence value 0.79
Number Of Software Predicting Nucleus 0
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsSPS2
Function assigned as per literature OsSPS2 is involved in providing solanesyl diphosphate for plastoquinone-9 formation
Subcellular localization as per literature plastid
Cells used for localization experiment onion peel
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 20421194
Reference of localization https://academic.oup.com/jxb/article/61/10/2683/432759
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 1
Number of PAT7 1
Number of Bipartite 0
Basic residues % 0.107
NLS score 0.21
Protein Sequence >LOC_Os05g50550.1 protein
MLSVSCPRVYMSRKALDFGQLASCRCRWAGRSGMRVAPRRRMPCVCFVASPSQPGLAAVDVPAEAISSARTTTMIPERISVSSLLEVVSDDLLKLNNNLK
SLVGAENPVLVSAAEQIFGAGGKRLRPALVFLVSRATAELAGLLELTTEHQRLAEIIEMIHTASLIHDDVIDDSGMRRGKETIHQLYGTRVAVLAGDFMF
AQSSWFLANLENIEVIKLISQVIKDFASGEIKQASTLFDCDVTLDDYLLKSYYKTASLLASSTRSAAIFSGVSTTICEQMYEYGRNLGLSFQVVDDILDF
TQSAEQLGKPAGSDLAKGNLTAPVIFALQDEPKLREIIDSEFSESDSLATAIDLVHRSGGIRRAQELAKEKGDLALQNLQCLPKSQFRSTLENVVKYNLQ
RID

GO Analysis
1
GO Category Cellular comBiological Processonent
GO Term endoplasmic reticulum
2
GO Category Biological Process
GO Term biosynthetic process
3
GO Category Biological Process
GO Term cellular process
4
GO Category Molecular Function
GO Term transferase activity
Presence of Splice variants No