LOC_Os05g50410

Expression Profile

RGAP LOCUS ID LOC_Os05g50410
RAP-DB ID Os05g0580500
Function Rad21 / Rec8 like protein, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 6

2) CELLO Prediction
localization Nuclear
score 4.449

3) NUCPRED Prediction
localization Nuclear
score 0.98

4) Y-Loc Prediction
localization Nuclear
score 99.86
confidence value 0.85
Number Of Software Predicting Nucleus 4
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsRad21-4|OsREC8
Function assigned as per literature OsREC8 is essential for chromatid cohesion and metaphase I monopolar orientation in rice meiosis.
Subcellular localization as per literature Nucleus
Cells used for localization experiment Microsporocytes
NUCLEAR or Not Nuclear NUCLEAR
PMID 21606318
Reference of localization http://www.plantphysiol.org/content/156/3/1386.long
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 5
Number of PAT7 1
Number of Bipartite 0
Basic residues % 0.12
NLS score 1.23
Protein Sequence >LOC_Os05g50410.1 protein
MFYSHQLLARKAPLGQIWMAATLHSKINRKRLDKLDIIKICEEILNPSVPMALRLSGILMGGVAIVYERKVKALYDDVSRFLIEINEAWRVKPVADPTVL
PKGKTQAKYEAVTLPENIMDMDVEQPMLFSEADTTRFRGMRLEDLDDQYINVNLDDDDFSRAENHHQADAENITLADNFGSGLGETDVFNRFERFDITDD
DATFNVTPDGHPQVPSNLVPSPPRQEDSPQQQENHHAASSPLHEEAQQGGASVKNEQEQQKMKGQQPAKSSKRKKRRKDDEVMMDNDQIMIPGNVYQTWL
KDPSSLITKRHRINSKVNLIRSIKIRDLMDLPLVSLISSLEKSPLEFYYPKELMQLWKECTEVKSPKAPSSGGQQSSSPEQQQRNLPPQAFPTQPQVDND
REMGFHPVDFADDIEKLRGNTSGEYGRDYDAFHSDHSVTPGSPGLSRRSASSSGGSGRGFTQLDPEVQLPSGRSKRQHSSGKSFGNLDPVEEEFPFEQEL
RDFKMRRLSDVGPTPDLLEEIEPTQTPYEKKSNPIDQVTQSIHSYLKLHFDTPGASQSESLSQLAHGMTTAKAARLFYQACVLATHDFIKVNQLEPYGDI
LISRGPKM

GO Analysis
1
GO Category Biological Process
GO Term cellular component organization
2
GO Category Biological Process
GO Term cell cycle
3
GO Category Biological Process
GO Term DNA metabolic process
4
GO Category Cellular comBiological Processonent
GO Term intracellular
5
GO Category Molecular Function
GO Term molecular_function
6
GO Category Biological Process
GO Term cellular process
Presence of Splice variants YES