LOC_Os05g49940

Expression Profile

RGAP LOCUS ID LOC_Os05g49940
RAP-DB ID Os05g0575000
Function expressed protein

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization chlo
score 12

2) CELLO Prediction
localization Nuclear
score 2.294

3) NUCPRED Prediction
localization Non Nuclear
score 0.39

4) Y-Loc Prediction
localization Chloroplast
score 6
confidence value 0.07
Number Of Software Predicting Nucleus 1
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsCV
Function assigned as per literature OsCV-mediated chloroplast degradation pathway is involved in the regulation of nitrogen assimilation during stress-induced plant senescence
Subcellular localization as per literature Chloroplast,pre-vacuolar compartment and vacoule
Cells used for localization experiment Nicotiana benthamiana cells
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 28992306
Reference of localization https://academic.oup.com/jxb/article/69/4/867/4037382
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 1
Number of Bipartite 0
Basic residues % 0.1
NLS score -0.13
Protein Sequence >LOC_Os05g49940.1 protein
MVVSCQLKPAPAPAAASRGGGAPHLQQLRRACVAAAAACAVLGTAGGPGEGAVMARAPEATAAAAAGPARWSDRRQCPPWRANSLENIVPENLPRPSARR
RFNSITAAAAAESAPPPASASPDAVLPFLAPRSGMGCFSL

GO Analysis
1
GO Category Molecular Function
GO Term molecular_function
2
GO Category Biological Process
GO Term biological_process
3
GO Category Cellular comBiological Processonent
GO Term plastid
Presence of Splice variants No