LOC_Os05g49930

Expression Profile

RGAP LOCUS ID LOC_Os05g49930
RAP-DB ID Os05g0574900
Function GRAS family transcription factor domain containing protein, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization pero
score 6

2) CELLO Prediction
localization PlasmaMembrane
score 1.06

3) NUCPRED Prediction
localization Non Nuclear
score 0.13

4) Y-Loc Prediction
localization Cytoplasm
score 44
confidence value 0.04
Number Of Software Predicting Nucleus 0
Seed Specific Yes
Transcription factor category GRAS

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsSLRL2
Function assigned as per literature
Subcellular localization as per literature NA
Cells used for localization experiment
NUCLEAR or Not Nuclear
PMID
Reference of localization
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.08
NLS score -0.47
Protein Sequence >LOC_Os05g49930.1 protein
MAQFGGFGGWSAMDVAAAAAAALGNVSGAVYHADPAAAVYASLVPGMAVVPGRAPPSAVQIEAARRWKELEKMALRSVNLMVTCAGAIQAGDYAAAAGSL
SDAREIFAKMPTTRTGIGRVLTHFADALAERLFPAFPQSAPPPPPPRGEQRELFRGFYEAGPYLKFAHLAANQAILEAFEGCNSVHVIDFALTDGIQWPS
LIQALAVRPGGPPFLRITGIGPHAAGNRDELRDVGLRLAEFARSCSVPFAFRGIAADQLDGLRPWMFQVAPGEAVAINSVLQLHRLLVDQDAAAAASFPA
PIDGVLDWVASMNPRVFTVVEQEADHNKSSLLERFTNSLFYYASMFDSLEAISRHGGGDGAGNPLAEAYLQGEIADIVSREGSSRVERHEQMPRWVERLR
RGGMTQLPLGATGLWQAAMQLREFSGAGFGVQENGGFLTLTWHSQRLYSASAWRATAGKKMTMMASGAADAMEESQNSNTNGGGGGSSGGGHGALNQIMQ

GO Analysis
1
GO Category Biological Process
GO Term biosynthetic process
2
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
3
GO Category Biological Process
GO Term biological_process
4
GO Category Biological Process
GO Term response to endogenous stimulus
5
GO Category Biological Process
GO Term signal transduction
6
GO Category Molecular Function
GO Term protein binding
7
GO Category Biological Process
GO Term transport
8
GO Category Biological Process
GO Term response to abiotic stimulus
9
GO Category Biological Process
GO Term response to stress
10
GO Category Molecular Function
GO Term sequence-specific DNA binding transcription factor activity
11
GO Category Cellular comBiological Processonent
GO Term nucleus
12
GO Category Biological Process
GO Term post-embryonic development
13
GO Category Biological Process
GO Term reproduction
14
GO Category Biological Process
GO Term metabolic process
15
GO Category Biological Process
GO Term cellular process
Presence of Splice variants No