LOC_Os05g49920

Expression Profile

RGAP LOCUS ID LOC_Os05g49920
RAP-DB ID Os05g0574800
Function pentatricopeptide, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization chlo
score 13

2) CELLO Prediction
localization PlasmaMembrane
score 1.175

3) NUCPRED Prediction
localization Non Nuclear
score 0.17

4) Y-Loc Prediction
localization Chloroplast
score 8
confidence value 0.14
Number Of Software Predicting Nucleus 0
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsPPR6
Function assigned as per literature OsPPR6 is involved in editing and splicing chloroplast RNA and required for chloroplast biogenesis in rice
Subcellular localization as per literature Chloroplasts
Cells used for localization experiment Rice protoplasts
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 28856519
Reference of localization https://link.springer.com/article/10.1007%2Fs11103-017-0654-0
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 3
Number of PAT7 2
Number of Bipartite 0
Basic residues % 0.098
NLS score 1.14
Protein Sequence >LOC_Os05g49920.1 protein
MPPPPARTHPNPPLLHLLASHRAPQPLPLTPAHGHLPPRKRPRGVGSAAAPPPPRAAASAEATYSDRSAALRALCSHGQLAQALWLLESSPEPPDEGAYV
ALFRLCEWRRAVDAGMRACARADAEHPSFGLRLGNAMLSMLVRFGEIWHAWRVFAKMPERDVFSWNVMVGGYGKVGFLEEALDLYYRMLWAGMRPDVYTF
PCVLRTCGGIPDWRMGREVHAHVLRFGFGDEVDVLNALVTMYAKCGDIVAARKVFDGMAVTDCISWNAMIAGHFENHECEAGLELFLTMLENEVQPNLMT
ITSVTVASGMLSEVGFAKEMHGFAVKRGFAIDVAFCNSLIQMYTSLGRMGDAGKIFSRMETKDAMSWTAMISGYEKNGFPDKALEVYALMELHNVSPDDV
TIASALAACACLGRLDVGIKLHELAQNKGFIRYVVVANALLEMYAKSKHIDKAIEVFKFMAEKDVVSWSSMIAGFCFNHRSFEALYYFRYMLGHVKPNSV
TFIAALSACAATGALRSGKEIHAYVLRCGIGSEGYVPNALLDLYVKCGQTSYAWAQFSVHSEKDVVSWNIMLSGFVAHGLGDIALSLFNQMVEMGEHPDE
VTFVALLCACSRAGMVIQGWELFHMMTEKFSIVPNLKHYACMVDLLSRVGKLTEAYNLINRMPIKPDAAVWGALLNGCRIHRHVELGELAAKVILELEPN
DVAYHVLLCDLYTDAGKWAQVARVRKTMREKGLEQDNGCSWVEVKGVTHAFLTDDESHPQIKEINVVLHGIYERMKACGFAPVESLEDKEVSEDDILCGH
SERLAVAFGLINTTPGTTISVTKNRYTCQSCHVIFKAISEIVRREITVRDTKQLHCFKDGDCSCGDIGYG

GO Analysis
1
GO Category Biological Process
GO Term response to abiotic stimulus
2
GO Category Biological Process
GO Term growth
3
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
4
GO Category Biological Process
GO Term cellular component organization
5
GO Category Biological Process
GO Term cellular process
6
GO Category Cellular comBiological Processonent
GO Term plastid
Presence of Splice variants No