LOC_Os05g49900

Expression Profile

RGAP LOCUS ID LOC_Os05g49900
RAP-DB ID Os05g0574600
Function 3-ketoacyl-CoA synthase, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization chlo
score 9

2) CELLO Prediction
localization PlasmaMembrane
score 2.134

3) NUCPRED Prediction
localization Non Nuclear
score 0.24

4) Y-Loc Prediction
localization Chloroplast
score 9
confidence value 0.34
Number Of Software Predicting Nucleus 0
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsCHS
Function assigned as per literature
Subcellular localization as per literature NA
Cells used for localization experiment
NUCLEAR or Not Nuclear
PMID
Reference of localization
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.115
NLS score -0.47
Protein Sequence >LOC_Os05g49900.1 protein
MAEQQQQQAPLLQRPAAAPPSSSRLPDFKQSVKLKYVKLGYHYLITHGAYLLLAPLPGLVAAHLSTFTLGDLADLWQNLQYNLVSVLLCSTLLVLVSTAY
FLTRPRPVYLVDFACYKPDDERKCSRARFMNCTERLGTFTPENVEFQRKIIERSGLGEDTYLPEAVLNIPPNPSMANARKEAEMVMYGALDELLAKTGVN
PKDIGILVVNCSLFNPTPSLSAMVVNHYKLRGNVVSYNLGGMGCSAGLISIDLAKDLLQVYPNTYAVVISMENITLNWYFGNDRSMLVSNCLFRMGGAAI
LLSNRGSARRRSKYQLVHTVRTHRGADDRCFGCVTQREDADGKTGVSLSKDLMAVAGEALKTNITTLGPLVLPMSEQLLFFATLVTRKVLKRKVKPYIPD
FKLAFEHFCIHAGGRAVLDELEKNLQLSDWHMEPSRMTLHRFGNTSSSSLWYELAYAEAKGRIKKGDRTWQIAFGSGFKCNSAVWRALRSVNPAKENNFT
NPWIDEIHRFPVPVPKVSAI

GO Analysis
1
GO Category Cellular comBiological Processonent
GO Term membrane
2
GO Category Biological Process
GO Term metabolic process
3
GO Category Biological Process
GO Term response to stress
4
GO Category Biological Process
GO Term response to abiotic stimulus
5
GO Category Molecular Function
GO Term transferase activity
6
GO Category Molecular Function
GO Term catalytic activity
Presence of Splice variants No