LOC_Os05g49220

Expression Profile

RGAP LOCUS ID LOC_Os05g49220
RAP-DB ID Os05g0567300
Function GTP-binding protein, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization chlo
score 10.5

2) CELLO Prediction
localization Cytoplasmic
score 1.703

3) NUCPRED Prediction
localization Non Nuclear
score 0.11

4) Y-Loc Prediction
localization Chloroplast
score 8
confidence value 0.22
Number Of Software Predicting Nucleus 0
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) WSL6
Function assigned as per literature WSL6 is essential for chloroplast ribosome biogenesis during early chloroplast development in rice
Subcellular localization as per literature Chloroplast
Cells used for localization experiment Rice protoplasts
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 31147815
Reference of localization https://link.springer.com/article/10.1007/s11103-019-00885-z
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.128
NLS score -0.47
Protein Sequence >LOC_Os05g49220.1 protein
MELGLALRLVAPPPRLPCRALQPPPMPCFSPCAARRSRIRSSRLERRVGVVVSGGSMASLAMEEEEEEEWEEAEEEAEGWQEEEAAVVTTRPRLELIEKP
DRSLCLLDEYESEELGTSHCANHRSGYVAVLGKPNVGKSTLINQIVGQKLSIVTDKPQTTRHRILGICSEPEYQIILYDTPGVIKKEMHKLDTMMMKNVR
SAVGSADCVLVVVDACKMPEKIDEILEEGVGNKDTELPVLLVLNKKDLIKPGEIAKKLEWYQKFTNADDVIPISAKFGHGVDDIKEWILSKLPLGPAYYP
KVLVY

GO Analysis
1
GO Category Molecular Function
GO Term RNA binding
2
GO Category Molecular Function
GO Term nucleotide binding
3
GO Category Cellular comBiological Processonent
GO Term plastid
Presence of Splice variants YES