LOC_Os05g48850

Expression Profile

RGAP LOCUS ID LOC_Os05g48850
RAP-DB ID Os05g0563000
Function no apical meristem protein, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization cyto
score 8

2) CELLO Prediction
localization Nuclear
score 1.028

3) NUCPRED Prediction
localization Non Nuclear
score 0.35

4) Y-Loc Prediction
localization Chloroplast
score 9
confidence value 0.41
Number Of Software Predicting Nucleus 1
Seed Specific No
Transcription factor category NAC

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsSND2
Function assigned as per literature OsSND2 may function as a master regulator to mediate SCWs biosynthesis.
Subcellular localization as per literature Nucleus
Cells used for localization experiment Rice protoplasts cells
NUCLEAR or Not Nuclear NUCLEAR
PMID 29855737
Reference of localization https://link.springer.com/article/10.1186/s12284-018-0228-z
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 2
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.127
NLS score 0.15
Protein Sequence >LOC_Os05g48850.1 protein
MTWCNSFSDVRTAVDSSLSPAAAVAAAAGKKAAASLAVLVKMCPSCGHRARYEQETTTIQDLPGLPAGVKFDPTDQELLEHLEGKARPDSRKLHPLVDEF
IPTIEGENGICYTHPERLPGVSKDGLVRHFFHRPSKAYTTGTRKRRKVHSDEVDGGETRWHKTGKTRPVMANGRPRGYKKILVLYTNYGKQRKPEKTNWV
MHQYHLGSDEEERDGELVVSKVFFQTQPRQCGSTAAAAAAKEASAAVAAAVVNSNYSIVHGHQGGGGGSFLKEANVVHEFYDPAATMGYRPPAPAAHFAP
NFAVHAARNSFGGP

GO Analysis
1
GO Category Cellular comBiological Processonent
GO Term nucleus
2
GO Category Biological Process
GO Term biosynthetic process
3
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
4
GO Category Biological Process
GO Term multicellular organismal development
5
GO Category Biological Process
GO Term cellular process
6
GO Category Molecular Function
GO Term sequence-specific DNA binding transcription factor activity
Presence of Splice variants No