LOC_Os05g48500

Expression Profile

RGAP LOCUS ID LOC_Os05g48500
RAP-DB ID Os05g0558800
Function expressed protein

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction

localization Nuclear
score 11

2) CELLO Prediction

localization Nuclear
score 3.429

3) NUCPRED Prediction

localization Non Nuclear
score 0.69

4) Y-Loc Prediction

localization Nuclear
score 98.21
confidence value 0.83
Number Of Software Predicting Nucleus 3
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization

Published gene name (updated 1 January 2020) OsNINJA1
Function assigned as per literature
Subcellular localization as per literature NA
Cells used for localization experiment
NUCLEAR or Not Nuclear
PMID
Reference of localization
Is Subcellular localization evidence by author available ? No

Sequence Analysis

Number of PAT4 0
Number of PAT7 1
Number of Bipartite 0
Basic residues % 0.089
NLS score -0.22
Protein Sequence >LOC_Os05g48500.1 protein
MDDENGLELSLGLSLGGTSGKSKARDAPLEPKAEPQVEESSSKGVSQTPEAPFVHYYQTNAENQEHSSKQRHSPAAPPFGNFWGQPGSSSVPVADGSNEQ
KPVSSKRKLLSEEISFQKKPNTAAEQPDAFSKSSDGGVKNAPISISTDDGSTGENEDVAESEAEGSNSWLVAQREDSAKGSVVNRGSDRKRSSDDAAVGF
QGKRQPSFSGSESSSGKLPQGNPLSLQASNVVAVPYQVPSQVSAPPSITNASNFTPVCTVQLRPPTNNGLAVTMGSTSQVAFGYPAVQLPTLETSSSWAF
GAPPQAMSSFTAKDKVERAGISQADDGKKTQEAGASSSALVEDDKKSDRALPLMGSAIRPGIAPNVKFGGSGSYPDLPWVSTTGTGPNGRTISGVTYKFG
RNEVKIVCACHGTHMTPEEFMRHASADAPGQENSATLPAFPVGNQAASAQN

GO Analysis

1
GO Category Biological Process
GO Term biosynthetic process
2
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
3
GO Category Cellular comBiological Processonent
GO Term nucleus
4
GO Category Biological Process
GO Term response to endogenous stimulus
5
GO Category Biological Process
GO Term signal transduction
6
GO Category Molecular Function
GO Term protein binding
Presence of Splice variants YES