LOC_Os05g48390

Expression Profile

RGAP LOCUS ID LOC_Os05g48390
RAP-DB ID Os05g0557700
Function ubiquitin conjugating enzyme protein, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 9

2) CELLO Prediction
localization Nuclear
score 1.082

3) NUCPRED Prediction
localization Non Nuclear
score 0.15

4) Y-Loc Prediction
localization Nuclear
score 93.85
confidence value 0.62
Number Of Software Predicting Nucleus 3
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) LTN1|OsPHO2|OsRLS1
Function assigned as per literature OsPHO2 is an E2 enzyme of the protein ubiquitination system and a negative regulator of Phosphate uptake and translocation
Subcellular localization as per literature Endoplasmic reticulum
Cells used for localization experiment Rice protoplasts
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 27895204
Reference of localization http://www.plantphysiol.org/content/173/1/812.long
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.076
NLS score -0.47
Protein Sequence >LOC_Os05g48390.1 protein
MDLYAIDSDTESYAETSDSEEDQEECELTYCGHAQNILSSLDESIGKIDNFLSFERGFLHGDIVCSAADPSGQLGRVVGVDMLVDLETSSGDIIKHVNSK
KLSRVRSFVSGDCVVMGPWIGRVIRAFDLVTVVFSDGARCEMLLRDSEVLKPIPPILFEDAPYFYYPGQRVRIVHPSISKSGTWLCGSWKASRDEGVVSH
VDVGLVHVNWITSVTNVWGGQSSSPPNFQDPKKLTLLSCFPYANWQLGDWCTLSDCEGSLWENSDKSCFMSMTWKSSSDTQTAIGTYGSDYSQTYVVAKT
KSSVDVLWQDGSTSLGLEPQSLVPVSTLGDHDFWPGQFILEKLTVEDNGRCQRTGIVTSVDALERTVKVKWAVSVDSDTVSYGDGLTEETVSAYELVLHP
DFSFFTGEVIIRSAVNIENSEANLTNGTVAVSRESLDTSSAFLSCIGNVLGYNDEGLEVQWASGAISRVQHFEIIALDRILDDSLESMIEEHTTDDLVDM
AEQEKMHLEDTKSALEESAGDCTGSLRKATAFLFSKTAFNFLTNVASSLFGAHDSTFSSSVNADSQYQIVTTAELQPSAEDISEEKQTMELITQFEKPTL
ASENAMTKGFDVVTDCSDHHFVKEIGHENVKRGWVKKIQQEWSILQNDLPDGIHVRVYEERMDLLRACLVGAAGTPYHDNLFFFDIFFPPDYPHEPPSVH
YHSGGLRLNPNLYESGKVCLSLLKTWAGTGSEVWDPENSTVLQLLLSLQALVLNEKPYFNEAGYDKFMGKADGEKNSITYNENAFLLSCKSMTYILHKPP
KHFENFVKEHFTCCAPHILDACKAYLGGDLVGHARDSAYISDDGCKNSSTGFKIMLAKLLPKLVTTFSEAGIPCSP

GO Analysis
1
GO Category Cellular comBiological Processonent
GO Term cellular_component
2
GO Category Biological Process
GO Term transport
3
GO Category Biological Process
GO Term response to extracellular stimulus
4
GO Category Biological Process
GO Term cell communication
5
GO Category Biological Process
GO Term response to stress
6
GO Category Biological Process
GO Term protein modification process
7
GO Category Biological Process
GO Term biological_process
8
GO Category Molecular Function
GO Term catalytic activity
Presence of Splice variants No