LOC_Os05g48040

Expression Profile

RGAP LOCUS ID LOC_Os05g48040
RAP-DB ID Os05g0554000
Function MATE efflux family protein, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization plas
score 8

2) CELLO Prediction
localization PlasmaMembrane
score 4.936

3) NUCPRED Prediction
localization Non Nuclear
score 0.01

4) Y-Loc Prediction
localization Cytoplasm
score 86
confidence value 0.5
Number Of Software Predicting Nucleus 0
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsMATE2
Function assigned as per literature OsMATE2 regulate plant growth and developmentas well as negatively affect disease resistance
Subcellular localization as per literature Plasma membrane
Cells used for localization experiment protoplast isolated from mesophyll cells of Arabidopsis leaves
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 24492654
Reference of localization https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3912489/
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.06
NLS score -0.47
Protein Sequence >LOC_Os05g48040.1 protein
MEERIPLLSKRFPADGTAGVGGGREEEGGDRWWSGLAREAGKVGSMALPMAAMSVAQNAVQVASNMMVGHLPGVLPLSASAIATSLASVSGFSLLVGMAS
GLETLCGQAYGAKQYDKLGVQTYRAIVTLTVVTIPISLLWVFIGKLLTLIGQDPVISHEAGRYIVWLIPGLFAYAVCQPLTKFLQSQSLIFPMLWSSIAT
LLLHIPLSWLLVFKTSMGFTGAALAISISYWLNTFMLAAYIRFSCSCKVTRSPPTIEAFRGVGLFLRIALPSALMLCFEWWSFEILVLLSGLLPNPELES
SVLSICLTTTSLMYTIPYGLGGAASTRVANELGAGNPEGARSAVHLVMSIAGTEAVLVTGMLFAAQRILGYAYSSDEEVVTYFTSMVPFVCISVAADSLQ
GVLSGIARGCGWQHLGAYVNLGSFYLVGIPVALLLGFGFKMEGKGLWLGIACGSVLQFLLLAVIAFFSNWQKMAEKARERIFGETPSEKQHLVLDATNSV

GO Analysis
1
GO Category Biological Process
GO Term transport
2
GO Category Cellular comBiological Processonent
GO Term membrane
3
GO Category Cellular comBiological Processonent
GO Term vacuole
4
GO Category Biological Process
GO Term cellular process
5
GO Category Molecular Function
GO Term transporter activity
Presence of Splice variants YES