LOC_Os05g48020

Expression Profile

RGAP LOCUS ID LOC_Os05g48020
RAP-DB ID Os05g0553700
Function SNARE domain containing protein, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization cyto
score 4

2) CELLO Prediction
localization Nuclear
score 1.88

3) NUCPRED Prediction
localization Non Nuclear
score 0.15

4) Y-Loc Prediction
localization Cytoplasm
score 98
confidence value 0.9
Number Of Software Predicting Nucleus 1
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsSYP71
Function assigned as per literature
Subcellular localization as per literature NA
Cells used for localization experiment
NUCLEAR or Not Nuclear
PMID
Reference of localization
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.151
NLS score -0.47
Protein Sequence >LOC_Os05g48020.1 protein
MSVIDILTRVDSICKKYDKYDVERLNGANVAGEDPFARLYGSIDADINECVEKAEAAKQEKNRATVVALNAEIRRTKAKLVEEDLPKLQRLALKKVKGLT
KEELATRSDLVAALPDRIQSIPDGSSSAKKNGTWGASGSRTGGAIKFDTSDVSNFYFPYASVVLDCNGNFDDEYFKGTEESNQFRREYEMRKMKQDEGLD
IIGEGLETLKNMASDMNEELDRQVPLMDEMDEKVDRANTDLKNTNVRLKETVLQLRSSRNFCIDIVLLCVILGIAAYLYNVLKK

GO Analysis
1
GO Category Biological Process
GO Term transport
2
GO Category Biological Process
GO Term cellular process
3
GO Category Molecular Function
GO Term transporter activity
4
GO Category Cellular comBiological Processonent
GO Term membrane
Presence of Splice variants No