LOC_Os05g47780

Expression Profile

RGAP LOCUS ID LOC_Os05g47780
RAP-DB ID Os05g0551000
Function E3 ubiquitin ligase, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 13

2) CELLO Prediction
localization Nuclear
score 1.822

3) NUCPRED Prediction
localization Nuclear
score 0.83

4) Y-Loc Prediction
localization Nuclear
score 99.4
confidence value 0.85
Number Of Software Predicting Nucleus 4
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsHRZ2
Function assigned as per literature OsHRZ2 is iron-binding sensors that negatively regulate iron acquisition under conditions of iron sufficiency
Subcellular localization as per literature Nucleus and cytosol
Cells used for localization experiment onion bulb epidermal cells
NUCLEAR or Not Nuclear NUCLEAR
PMID 24253678
Reference of localization https://www.nature.com/articles/ncomms3792
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 1
Number of PAT7 1
Number of Bipartite 0
Basic residues % 0.121
NLS score 0.21
Protein Sequence >LOC_Os05g47780.1 protein
MEKIERHFKNEETKVLPQARIHFSSEKQRELLYKSLCVIPLKLLERVLPWFVSKLNDQDAEAFLQNMFLAAPSSEAALVTLLSGWACKGRSKGTSNSGKF
ICLTPRALSSPLDENGFKDCQLCPCSLQSDICSRPAKKWNDTESSNISNCSQTADIALTCKNRPCHIPGLRVEISNLAVNSFASAESFRSLSLNYSAPSL
YSSLFSWETDAAFSGPDNISRPIDTIFKFHKAIRKDLEFLDVESRKLIDGDESSLRQFIGRFRLLWGLYRAHSNAEDEIVFPALESKETLHNVSHSYTLD
HKQEEELFKDISTILFELSQLHADLKHPLGGADAVGANHIHPYNRIDWSKKNNELLTKLQGMCKSIRVTLSNHVHREELELWPLFDKHFSVEEQDKIVGR
IIGSTGAEVLQSMLPWVTSALSLDEQNNMLDTWRQVTKNTMFDEWLNEWWKRSPTSSGPSSDASHPEEDHFQEKFDQSEQMFKPGWKDIFRMNQSELEAE
IRKVSRDSTLDPRRKAYLIQNLMTSRWIAAQQKSPQPQSEDRNGCTVLPGCCPSYRDPENQIFGCEHYKRKCKLVAACCNKLFTCRFCHDKVSDHTMERK
ATVEMMCMQCLKVQPVGPNCQTPSCNGLSMAKYYCSVCKFFDDERSVYHCPFCNLCRLGQGLGIDFFHCMKCNCCLGMKLIEHKCREKMLEMNCPICCDF
LFTSSAAVKGLPCGHFMHSACFQAYTCSHYTCPICSKSLGDMTVYFGMLDGLLAAEELPEEYRDRCQDILCNDCERKGRSRFHWLYHKCGFCGSYNTRVI
KIDRADCSTSD

GO Analysis
1
GO Category Biological Process
GO Term response to extracellular stimulus
2
GO Category Biological Process
GO Term cell communication
3
GO Category Biological Process
GO Term response to stress
4
GO Category Molecular Function
GO Term binding
5
GO Category Biological Process
GO Term reproduction
6
GO Category Biological Process
GO Term post-embryonic development
7
GO Category Biological Process
GO Term embryo development
Presence of Splice variants No