LOC_Os05g46270

Expression Profile

RGAP LOCUS ID LOC_Os05g46270
RAP-DB ID Os05g0540100
Function FEN1A - Putative flap endonuclease protein, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization cyto
score 5

2) CELLO Prediction
localization Cytoplasmic
score 3.639

3) NUCPRED Prediction
localization Non Nuclear
score 0.14

4) Y-Loc Prediction
localization Nuclear
score 99.14
confidence value 0.82
Number Of Software Predicting Nucleus 1
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsFEN-1
Function assigned as per literature OsFEN-1 is involved in DNA replication and repair
Subcellular localization as per literature Nuclei of the interphase cells
Cells used for localization experiment Tobacco BY-2 cells
NUCLEAR or Not Nuclear NUCLEAR
PMID 11851910
Reference of localization https://onlinelibrary.wiley.com/doi/pdf/10.1046/j.1365-313x.2001.01184.x
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.147
NLS score -0.47
Protein Sequence >LOC_Os05g46270.1 protein
MGIKGLTKLLADNAPKAMKEQKFESYFGRRIAVDASMSIYQFLIVVGRTGMETLTNEAGEVTSHLQGMFNRTIRLLEAGIKPVYVFDGKPPDLKKQELAK
RYSKREDATKELTEAVEEGDKDAIEKFSKRTVKVTKQHNEECKRLLRLMGVPVVEAPCEAEAECAALCINDMVYAVASEDMDSLTFGAPRFLRHLMDPSS
KKIPVMEFEVAKVLEELELTMDQFIDLCILSGCDYCDSIKGIGGQTALKLIRQHGSIESILENINKDRYQIPEDWPYQEARRLFKEPNVTLDIPELKWNA
PDEEGLVEFLVKENGFNQDRVTKAIEKIKFAKNKSSQGR

GO Analysis
1
GO Category Molecular Function
GO Term DNA binding
2
GO Category Molecular Function
GO Term nuclease activity
3
GO Category Biological Process
GO Term response to stress
4
GO Category Biological Process
GO Term DNA metabolic process
5
GO Category Cellular comBiological Processonent
GO Term cytosol
6
GO Category Molecular Function
GO Term catalytic activity
Presence of Splice variants No