LOC_Os05g46240
| RGAP LOCUS ID | LOC_Os05g46240 | ||||
| RAP-DB ID | Os05g0539800 | ||||
| Function | green ripe-like, putative, expressed | ||||
Sub-cellular Localization Predictions |
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1) WoLF-PSORT Prediction |
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| localization | vacu | ||||
| score | 12 | ||||
2) CELLO Prediction |
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| localization | PlasmaMembrane | ||||
| score | 3.82 | ||||
3) NUCPRED Prediction |
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| localization | Non Nuclear | ||||
| score | 0.06 | ||||
4) Y-Loc Prediction |
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| localization | Cytoplasm | ||||
| score | 90 | ||||
| confidence value | 0.77 | ||||
| Number Of Software Predicting Nucleus | 0 | ||||
| Seed Specific | No | ||||
| Transcription factor category | |||||
Experimental evidence for subcellular localization |
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| Published gene name (updated 1 January 2020) | OsRTH2 | ||||
| Function assigned as per literature | OsRTH2 modulate rice ethylene responses | ||||
| Subcellular localization as per literature | Golgi and ER | ||||
| Cells used for localization experiment | Onion epiermal cells | ||||
| NUCLEAR or Not Nuclear | NOT NUCLEAR | ||||
| PMID | 22451723 | ||||
| Reference of localization | https://academic.oup.com/jxb/article/63/11/4151/601312 | ||||
| Is Subcellular localization evidence by author available ? | No | ||||
Sequence Analysis |
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| Number of PAT4 | 0 | ||||
| Number of PAT7 | 0 | ||||
| Number of Bipartite | 0 | ||||
| Basic residues % | 0.073 | ||||
| NLS score | -0.47 | ||||
| Protein Sequence | >LOC_Os05g46240.1 protein MEVEAACGDGVVSSSNEMQELWPLGEVDQKGTRFPCCIVWTPLPVVSWLAPYIGHVGIAREDGTVMDFAGSNFVSVDDLAYGSAARYLQLDRRKCCFPAN LAAHVCARSYEHSEAGTAISWDDALQSGARRFEHKCYNLFTCNSHSFVASCLNRLAYGGSVGWNVLNLAALVWLRGRWLGKMAVVRSLLPFAAVACVGVL MAGWSFLISMAAFSSLLLGWFVLGVYCFKGLVC |
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GO Analysis |
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| Presence of Splice variants | YES | ||||