LOC_Os05g45890

Expression Profile

RGAP LOCUS ID LOC_Os05g45890
RAP-DB ID Os05g0535500
Function tRNAHis guanylyltransferase family protein, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 11

2) CELLO Prediction
localization Nuclear
score 2.095

3) NUCPRED Prediction
localization Non Nuclear
score 0.57

4) Y-Loc Prediction
localization Nuclear
score 92.38
confidence value 0.45
Number Of Software Predicting Nucleus 3
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) AET1
Function assigned as per literature AET1 is a tRNAHis guanylyltransferase and regulates the environmental temperature response in rice by playing a dual role in tRNA modification and translational control.
Subcellular localization as per literature Endoplasmic reticulum
Cells used for localization experiment Rice protoplasts
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 31075443
Reference of localization https://www.sciencedirect.com/science/article/abs/pii/S1674205219301625
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 1
Number of Bipartite 0
Basic residues % 0.139
NLS score -0.13
Protein Sequence >LOC_Os05g45890.1 protein
MANSEYEYVKREFELDSLLPPSNWIVVRIDGCHFHRFSKIHTFEKPNDERALRLMNACATSMLEKFPDIVFAYGVSDEYSFVFREETEFYQRRESKILSL
CVSYFTSVYVMKWKDFFPNKELKEPPYFDGRVVCYPNLKTIRDYLAWRQVDCHINNQYNTCFWSLVKSGKTEKEAQQALKGTFSKDKNELLSQQFQINYD
DEPAIFRKGSCVYRDKVETMVKTDRCGNPIKRTRLVITNANVDIIGPEFWENHPYILREEKCRYENVKKFDINHRLPPCNWTVVRIDICKFEQFSLIHSF
DKPNDEAALRLMNASASLMMESFPDIVFGYGFSNEYSFVFQDKTELYQRQESLILSSCTSRFTLFYMMKWKDFFPNKDLVEPPHFEAELLCYPKQKILCD
YLSSRQAECHTTNQYSTCFWMLVKSGKSENEAREILKGTLSKDKNELLFQQFHLNYNNEPAVFRKGSCTYRQKVEESADAEGRENTTRERWDVIVAHADM
GTEFWRKHPYILRKLDLLG

GO Analysis
1
GO Category Molecular Function
GO Term molecular_function
2
GO Category Cellular comBiological Processonent
GO Term cellular_component
3
GO Category Biological Process
GO Term biological_process
Presence of Splice variants YES