| RGAP LOCUS ID |
LOC_Os05g45420 |
| RAP-DB ID |
Os05g0530500 |
| Function |
CAMK_KIN1/SNF1/Nim1_like_AMPKh.3 - CAMK includes calcium/calmodulin depedent protein kinases, expressed |
Sub-cellular Localization
Predictions |
1) WoLF-PSORT Prediction |
| localization |
cyto |
| score |
10 |
2) CELLO
Prediction
|
| localization |
Cytoplasmic |
| score |
2.935 |
3) NUCPRED
Prediction
|
| localization |
Non Nuclear |
| score |
0.27 |
4) Y-Loc
Prediction
|
| localization |
Cytoplasm |
| score |
93 |
| confidence value |
0.51 |
| Number Of Software Predicting Nucleus |
0 |
| Seed Specific |
No |
| Transcription factor category |
|
Experimental evidence for
subcellular localization |
| Published gene name (updated 1 January 2020) |
SnRK1A|OsSnRK1a |
| Function assigned as per literature |
|
| Subcellular localization as per literature |
NA |
| Cells used for localization experiment |
|
| NUCLEAR or Not Nuclear |
|
| PMID |
|
| Reference of localization |
|
| Is Subcellular localization evidence by author available ?
|
No |
Sequence Analysis
|
| Number of PAT4 |
0 |
| Number of PAT7 |
0 |
| Number of Bipartite |
1 |
| Basic residues % |
0.129 |
| NLS score |
0.02 |
| Protein Sequence |
>LOC_Os05g45420.1 protein
MEGAGRDGNPLGGYRIGKTLGIGSFGKVKIAEHILTGHKVAIKILNRRKIKSMEMEEKVKREIKILRLFMHPHIIRLYEVIDTPADIYVVMEYVKSGELF
DYIVEKGRLQEEEARRFFQQIISGVEYCHRNMVVHRDLKPENLLLDSKCNVKIADFGLSNVMRDGHFLKTSCGSPNYAAPEVISGKLYAGPEVDVWSCGV
ILYALLCGTLPFDDENIPNLFKKIKGGIYTLPSHLSPLARDLIPRMLVVDPMKRITIREIREHQWFTVGLPRYLAVPPPDTAQQVKKLDDETLNDVINMG
FDKNQLIESLHKRLQNEATVAYYLLLDNRLRTTSGYLGAEFHESMESSLAQVTPAETPNSATDHRQHGHMESPGFGLRHHFAADRKWALGLQSRAHPREI
ITEVLKALQELNVCWKKIGHYNMKCRWSPSFPSHESMMHNNHGFGAESAIIETDDSEKSTHTVKFEIQLYKTRDEKYLLDLQRVSGPQLLFLDLCSAFLT
QLRVL |
GO Analysis |
| 1 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
nucleus |
|
| 2 |
| GO Category |
Biological Process |
| GO Term |
reproduction |
|
| 3 |
| GO Category |
Biological Process |
| GO Term |
multicellular organismal development |
|
| 4 |
| GO Category |
Biological Process |
| GO Term |
response to endogenous stimulus |
|
| 5 |
| GO Category |
Biological Process |
| GO Term |
signal transduction |
|
| 6 |
| GO Category |
Biological Process |
| GO Term |
response to stress |
|
| 7 |
| GO Category |
Biological Process |
| GO Term |
protein modification process |
|
| 8 |
| GO Category |
Biological Process |
| GO Term |
response to extracellular stimulus |
|
| 9 |
| GO Category |
Molecular Function |
| GO Term |
protein binding |
|
| 10 |
| GO Category |
Molecular Function |
| GO Term |
kinase activity |
|
| 11 |
| GO Category |
Biological Process |
| GO Term |
post-embryonic development |
|
| Presence of Splice variants |
YES |
