LOC_Os05g45280

Expression Profile

RGAP LOCUS ID LOC_Os05g45280
RAP-DB ID Os05g0529000
Function protein of unknown function DUF502 domain containing protein, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization plas
score 5

2) CELLO Prediction
localization PlasmaMembrane
score 4.18

3) NUCPRED Prediction
localization Non Nuclear
score 0.07

4) Y-Loc Prediction
localization Cytoplasm
score 71
confidence value 0.42
Number Of Software Predicting Nucleus 0
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsCOLE1
Function assigned as per literature OsCOLE1 regulates intracellular auxin transport and plays role in rice development
Subcellular localization as per literature Tonoplast
Cells used for localization experiment Rice mesophyll cell protoplasts and tobacco leaves
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 27265035
Reference of localization https://nph.onlinelibrary.wiley.com/doi/full/10.1111/nph.14021
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.084
NLS score -0.47
Protein Sequence >LOC_Os05g45280.1 protein
MGDEKSPLSQMGSRDRDRELLIPVSGGGSAPGDGDGDGDRAASSSASAALSSSSREAFHKVVRSWASKKFMTGCVILFPIAITFYITWWFIHFVDGFFSP
IYAQLGINMFGLGFITSVTFIFVVGVFMSSWVGASVLSLGEWIIKRMPLVRHIYNASKQISAAISPDQNKQAFKEVVIIRHPRIGEYAFGFITSSVSLQS
YTGQEELYCVYVPTNHLYIGDIFMVNSKDVIRPNLSVREGIEIVVSGGMSMPQILSTLDPQTILGDRTGASRS

GO Analysis
1
GO Category Molecular Function
GO Term molecular_function
2
GO Category Cellular comBiological Processonent
GO Term membrane
3
GO Category Biological Process
GO Term multicellular organismal development
Presence of Splice variants No