LOC_Os05g44210

Expression Profile

RGAP LOCUS ID LOC_Os05g44210
RAP-DB ID Os05g0518600
Function trehalose-6-phosphate synthase, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 5

2) CELLO Prediction
localization Cytoplasmic
score 1.19

3) NUCPRED Prediction
localization Non Nuclear
score 0.13

4) Y-Loc Prediction
localization Cytoplasm
score 60
confidence value 0.06
Number Of Software Predicting Nucleus 1
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsTPS1
Function assigned as per literature
Subcellular localization as per literature NA
Cells used for localization experiment
NUCLEAR or Not Nuclear
PMID
Reference of localization
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 1
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.102
NLS score -0.29
Protein Sequence >LOC_Os05g44210.1 protein
MPTPAPSASSSSSSCGGGGGGAGAASSYSSSPDDRMLRGECGRRHPFASSAAVGAGSPDAMDTDSAEPSSAATSVADFGARSPFSPGAASPANMDDAGGA
SAAGHAARPPLAGPRSGFRRLGLRGMKQRLLVVANRLPVSANRRGEDQWSLEISAGGLVSALLGVKDVDAKWIGWAGVNVPDEVGQRALTRALAEKRCIP
VFLDEEIVHQYYNGYCNNILWPLFHYLGLPQEDRLATTRNFESQFNAYKRANQMFADVVYQHYKEGDVIWCHDYHLMFLPKCLKDHDINMKVGWFLHTPF
PSSEIYRTLPSRSELLRSVLCADLVGFHTYDYARHFVSACTRILGLEGTPEGVEDQGRLTRVAAFPIGIDSERFKRALELPAVKRHITELTQRFDGRKVM
LGVDRLDMIKGIPQKILAFEKFLEENHEWNDKVVLLQIAVPTRTDVPEYQKLTSQVHEIVGRINGRFGTLTAVPIHHLDRSLDFHALCALYAVTDVALVT
SLRDGMNLVSYEYVACQGSKKGVLILSEFAGAAQSLGAGAILVNPWNITEVADSIKHALTMSSDEREKRHRHNYAHVTTHTAQDWAETFVCELNETVAEA
QLRTRQVPPDLPSQAAIQQYLHSKNRLLILGFNSTLTEPVESSGRRGGDQIKEMELKLHPELKGPLRALCEDEHTTVIVLSGSDRSVLDENFGEFNMWLA
AEHGMFLRPTNGEWMTTMPEHLNMDWVDSVKNVFEYFTERTPRSHFEHRETSFVWNYKYADVEFGRLQARDMLQHLWTGPISNAAVDVVQGSRSVEVRSV
GVTKGAAIDRILGEIVHSKSMITPIDYVLCIGHFLGKVIMQLIYMCISVSFSARCFFCL

GO Analysis
1
GO Category Biological Process
GO Term metabolic process
2
GO Category Cellular comBiological Processonent
GO Term cytoplasm
3
GO Category Biological Process
GO Term signal transduction
4
GO Category Molecular Function
GO Term transferase activity
5
GO Category Biological Process
GO Term cellular process
6
GO Category Biological Process
GO Term embryo development
7
GO Category Biological Process
GO Term carbohydrate metabolic process
8
GO Category Biological Process
GO Term reproduction
9
GO Category Biological Process
GO Term post-embryonic development
Presence of Splice variants YES