LOC_Os05g43950

Expression Profile

RGAP LOCUS ID LOC_Os05g43950
RAP-DB ID Os05g0515700
Function expressed protein

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 13

2) CELLO Prediction
localization Nuclear
score 3.984

3) NUCPRED Prediction
localization Non Nuclear
score 0.73

4) Y-Loc Prediction
localization Nuclear
score 99.99
confidence value 0.98
Number Of Software Predicting Nucleus 3
Seed Specific No
Transcription factor category VOZ

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsVOZ2
Function assigned as per literature OsVOZ2 play important roles both individually and together for Xoo virulence in rice
Subcellular localization as per literature cytoplasm and the nucleus
Cells used for localization experiment maize mesophyll protoplasts
NUCLEAR or Not Nuclear NUCLEAR
PMID 24019919
Reference of localization http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0073346
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.083
NLS score -0.47
Protein Sequence >LOC_Os05g43950.1 protein
MAGDPAAGGDGGRGSSGGKGSSPSSSRHQQFRNLAKTRVDDLQEMFSGLQSARKESRSADAALLEEQVHHMLREWRAELNVPSPASSLQNSQSQGNNREA
SDPPSETLRLLQLAGAEEEDDATSKLVMPRSPMPMQSSHEGHNLSPVLQGGTMAGGAAELMVPRSPLQQMPSSHQSHGHGQDGGQNLQGEAVMGSTAATA
APHLGQGMQGDCGGMAGVTNAMFHDQLYYIDHELNIDDFLQDDDYKINLPGSNPDGPNTMQGIGQLEHQQYNLPLDLPPNSFVDANNSAQSSGDVFFHMS
DLLTTMCPSPSQYLGPKCALWDCGRPVRGSDECQHYCNPYHAGLALNDDGLLGTRPVMRPRGIDLKDGPLFAALSAKVQGKNVGIPVCEGAATTKSPWNA
PELFDLSLLEGESLREWLFFDTPRRAFDSGNRKQRSLPDYNGRGWHESRKQVMKDFGGLKRSYYMDPQPSSNYEWHLFEYETNDSDALALYRLEYKSSDT
KRSVKSKLASSPLSEIQQQMVRLSADSPVESKRTARSRAKANQKDNNSNAYPALNTPVQVSASNAHQTMSVNTPDQVNVSNAYQTMPLNTPNQPGPSNAY
HAASQMDQMTFLDGSVVYGPHLPYGYSTERSDFYWNPSDGT

GO Analysis
1
GO Category Cellular comBiological Processonent
GO Term cellular_component
2
GO Category Biological Process
GO Term biological_process
3
GO Category Biological Process
GO Term biosynthetic process
4
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
Presence of Splice variants No