LOC_Os05g43450

Expression Profile

RGAP LOCUS ID LOC_Os05g43450
RAP-DB ID Os05g0509900
Function transcription initiation factor IIF beta subunit, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 11

2) CELLO Prediction
localization Nuclear
score 3.443

3) NUCPRED Prediction
localization Non Nuclear
score 0.61

4) Y-Loc Prediction
localization Nuclear
score 77.15
confidence value 0.45
Number Of Software Predicting Nucleus 3
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsTFIIF2-1
Function assigned as per literature
Subcellular localization as per literature NA
Cells used for localization experiment
NUCLEAR or Not Nuclear
PMID
Reference of localization
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 2
Basic residues % 0.158
NLS score 0.68
Protein Sequence >LOC_Os05g43450.1 protein
MGEEAKYLETARAERSVWLMKCPPVVSHAWQGAVSSSDAAGSNPNPVVAKVVLSLDLLRSEEPSLQFKMEMAQTNTGNTPKSYSLNMSKDFVPMCVFSES
NQGKLSCEGKVEHKFDMKPHSDNLVNYGKLCRERTQKSMIKTRKVQVIEDHRMSLIPLPGMVGLIPSGSKEKKKQTPTKPSDAKRIRRDRRELENIIFKL
FERQPNWALKALVQETDQPEQFLKEILNDLCFYNKRGPNQGTHELKPEYKKSTGDTDAS

GO Analysis
1
GO Category Molecular Function
GO Term nucleotide binding
2
GO Category Cellular comBiological Processonent
GO Term nucleoplasm
3
GO Category Biological Process
GO Term catabolic process
4
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
5
GO Category Molecular Function
GO Term catalytic activity
6
GO Category Cellular comBiological Processonent
GO Term mitochondrion
7
GO Category Biological Process
GO Term biosynthetic process
8
GO Category Molecular Function
GO Term hydrolase activity
Presence of Splice variants No