LOC_Os05g43380

Expression Profile

RGAP LOCUS ID LOC_Os05g43380
RAP-DB ID Os05g0509400
Function tesmin/TSO1-like CXC domain containing protein, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 14

2) CELLO Prediction
localization Nuclear
score 3.974

3) NUCPRED Prediction
localization Nuclear
score 0.87

4) Y-Loc Prediction
localization Nuclear
score 84.26
confidence value 0.13
Number Of Software Predicting Nucleus 4
Seed Specific No
Transcription factor category CPP

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsCPP5
Function assigned as per literature OsCPP5 act as repressors of OsNHX1 gene expression
Subcellular localization as per literature Nucleus
Cells used for localization experiment onion epidermal cells
NUCLEAR or Not Nuclear NUCLEAR
PMID 27766460
Reference of localization https://link.springer.com/article/10.1007%2Fs11103-016-0547-7
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 2
Number of Bipartite 0
Basic residues % 0.128
NLS score 0.22
Protein Sequence >LOC_Os05g43380.1 protein
MEATPISVKPPSPVAAAPPPPPVQVPVPPPPPPPLPPAAAAVEPLPPQPVAVVVAEAEPCSMNQLALTPTPKRQKVEESADGNGCKHCACKKSRCLKLYC
PCFAGGGYCSEKCGCQPCFNKALYAETVQTTRKVLLSRQKRMSLKINRRSEANAEAVEDAHHSSSSTPPRRGCNCKKSSCLKKYCDCYQDGTGCSLFCRC
EDCRNPFGKNEGIMAEESKRFLYTGADLDHSEDEQDFIVERSPRLQSPISKESSFQQTPPHIRATNRDTHMFPQAISQWQPRSWHCSKRQSNDRVIDDSG
EYKNSNHDWQLAKPEDSYSISRCVQILNGMAELSQVEKSVAPDVFLQAGNREIFISLNGDVRALWLKRKIQNLT

GO Analysis
1
GO Category Biological Process
GO Term biosynthetic process
2
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
3
GO Category Biological Process
GO Term biological_process
4
GO Category Molecular Function
GO Term sequence-specific DNA binding transcription factor activity
Presence of Splice variants YES