| RGAP LOCUS ID |
LOC_Os05g41880 |
| RAP-DB ID |
Os05g0498300 |
| Function |
mutS domain V family protein, expressed |
Sub-cellular Localization
Predictions |
1) WoLF-PSORT Prediction |
| localization |
cyto |
| score |
6 |
2) CELLO
Prediction
|
| localization |
PlasmaMembrane |
| score |
3.528 |
3) NUCPRED
Prediction
|
| localization |
Non Nuclear |
| score |
0.09 |
4) Y-Loc
Prediction
|
| localization |
Nuclear |
| score |
66.8 |
| confidence value |
0.55 |
| Number Of Software Predicting Nucleus |
1 |
| Seed Specific |
No |
| Transcription factor category |
|
Experimental evidence for
subcellular localization |
| Published gene name (updated 1 January 2020) |
OsMSH5 |
| Function assigned as per literature |
OsMSH5 plays a role in crossover formation during rice meiosis |
| Subcellular localization as per literature |
Chromosomes |
| Cells used for localization experiment |
Meiocytes |
| NUCLEAR or Not Nuclear |
NUCLEAR |
| PMID |
23220939 |
| Reference of localization |
https://www.cell.com/action/showPdf?pii=S1674-2052%2814%2960035-6 |
| Is Subcellular localization evidence by author available ?
|
No |
Sequence Analysis
|
| Number of PAT4 |
0 |
| Number of PAT7 |
0 |
| Number of Bipartite |
0 |
| Basic residues % |
0.093 |
| NLS score |
-0.47 |
| Protein Sequence |
>LOC_Os05g41880.1 protein
MDEEEEEEMSEREVDSQVHMACVMQGRRVGIAYYDSSMHQLFVLEIWEDITEDFPLIDLVKYQSKPSTIYTSTKTDEALLLALQRNDCNDEAPAVKLMKS
STFSYEQAWHRLMYLKVAAMDEGLSVKERICFLNSMMDLGSDVQVRAAGGLLAILDNERLLDTLDQMEGGASIAIDSVAQISFYPFIRNDIIRTKCANVL
ISMFLWFYFGNKLESYLCRIVVRHSYGKTSLEVTVTFYNHDCRFAKFNSPSSFCTSSDWHAFLKCICSLLHINKIFEVGISEHLAIKLQHMNIDLVGKAN
SSITEELDYVSDLVVGVIDVQRGKEKGYDTLVKDGLCEELDELRMVYEELPDFLEQVSANEIASFPFSFECRKAPLIVYVHQIGYLMCFFDEKISDALLI
GLPDFEFAEMTVDTFVPNDTKIRSSGRINIITGPNYSGKSIYIKQVALVVFLAHIGSFVPADSAIVGLTDRIFCAMGSKSMTSEQSTFMIDLHQVGTMLR
WYWSAWRNYQPFYRLRLSSKGASLEKCCY |
GO Analysis |
| 1 |
| GO Category |
Molecular Function |
| GO Term |
nucleotide binding |
|
| 2 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
intracellular |
|
| 3 |
| GO Category |
Biological Process |
| GO Term |
cell cycle |
|
| 4 |
| GO Category |
Biological Process |
| GO Term |
response to stress |
|
| 5 |
| GO Category |
Biological Process |
| GO Term |
DNA metabolic process |
|
| 6 |
| GO Category |
Molecular Function |
| GO Term |
DNA binding |
|
| 7 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
nucleus |
|
| 8 |
| GO Category |
Biological Process |
| GO Term |
catabolic process |
|
| 9 |
| GO Category |
Biological Process |
| GO Term |
nucleobase, nucleoside, nucleotide and nucleic acid metabolic process |
|
| 10 |
| GO Category |
Biological Process |
| GO Term |
cellular component organization |
|
| 11 |
| GO Category |
Molecular Function |
| GO Term |
hydrolase activity |
|
| Presence of Splice variants |
No |
