| RGAP LOCUS ID |
LOC_Os05g41760 |
| RAP-DB ID |
Os05g0497200 |
| Function |
AP2 domain containing protein, expressed |
Sub-cellular Localization
Predictions |
1) WoLF-PSORT Prediction |
| localization |
Nuclear |
| score |
9 |
2) CELLO
Prediction
|
| localization |
Nuclear |
| score |
2.612 |
3) NUCPRED
Prediction
|
| localization |
Non Nuclear |
| score |
0.11 |
4) Y-Loc
Prediction
|
| localization |
Nuclear |
| score |
98.45 |
| confidence value |
0.67 |
| Number Of Software Predicting Nucleus |
3 |
| Seed Specific |
No |
| Transcription factor category |
AP2-EREBP/ERF |
Experimental evidence for
subcellular localization |
| Published gene name (updated 1 January 2020) |
MFS1 |
| Function assigned as per literature |
MULTI-FLORET SPIKELET1(MSF1) encodes an AP2/ERF protein which play a role in spikelet meristem fate and sterile lemma identity in rice |
| Subcellular localization as per literature |
Nucleus |
| Cells used for localization experiment |
Rice protoplasts |
| NUCLEAR or Not Nuclear |
NUCLEAR |
| PMID |
23629832 |
| Reference of localization |
http://www.plantphysiol.org/content/162/2/872.long |
| Is Subcellular localization evidence by author available ?
|
No |
Sequence Analysis
|
| Number of PAT4 |
1 |
| Number of PAT7 |
1 |
| Number of Bipartite |
0 |
| Basic residues % |
0.095 |
| NLS score |
0.12 |
| Protein Sequence |
>LOC_Os05g41760.1 protein
MELDMGAGGGGGVVGGGRAEAHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTYDTPVEAALAYDRAAVALRGVKARTNFGSGSSGGGGVGGHGHGHSHAQL
PQLHHRMHPPRPPQGPGHFGGLDISHPSPWHYVYFPARVQAMAPAAAGHVAAHVAASLPSTTLELRTGPSAGELPFDLNEPPPALLFGS |
GO Analysis |
| 1 |
| GO Category |
Molecular Function |
| GO Term |
DNA binding |
|
| 2 |
| GO Category |
Biological Process |
| GO Term |
response to endogenous stimulus |
|
| 3 |
| GO Category |
Biological Process |
| GO Term |
signal transduction |
|
| 4 |
| GO Category |
Biological Process |
| GO Term |
biosynthetic process |
|
| 5 |
| GO Category |
Biological Process |
| GO Term |
nucleobase, nucleoside, nucleotide and nucleic acid metabolic process |
|
| 6 |
| GO Category |
Molecular Function |
| GO Term |
sequence-specific DNA binding transcription factor activity |
|
| Presence of Splice variants |
No |
