LOC_Os05g41450

Expression Profile

RGAP LOCUS ID LOC_Os05g41450
RAP-DB ID Os05g0494100
Function histone-like transcription factor and archaeal histone, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 8

2) CELLO Prediction
localization Nuclear
score 3.344

3) NUCPRED Prediction
localization Non Nuclear
score 0.67

4) Y-Loc Prediction
localization Nuclear
score 99.73
confidence value 0.81
Number Of Software Predicting Nucleus 3
Seed Specific No
Transcription factor category CCAAT/NF_YC

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsHAPL1
Function assigned as per literature OsHAPL1 play a role as a negative heading date regulator
Subcellular localization as per literature Nucleus
Cells used for localization experiment Rice protoplasts, Root cells of transgenic rice plant
NUCLEAR or Not Nuclear NUCLEAR
PMID 28043949
Reference of localization https://academic.oup.com/jxb/article/68/3/553/2770514
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 1
Number of PAT7 2
Number of Bipartite 2
Basic residues % 0.145
NLS score 1.52
Protein Sequence >LOC_Os05g41450.1 protein
MRKKLDTRFPAPRIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCNRTYDITVQRGVKTLSSSHLKQCIHSYNVYDFLRDVVSKVPDMGTSDAGVDDK
LGKRRKTAEDDSEEESKRTRNEAASQTSTGRGRGRGRGRGRRGGRVSEREIISAYEKFEENHEFPPGQFSKPSQLKVDVSVDGTDAIETKEATPLSNARA
SLRNIDLNIELTDYDDEGSAPLEVQPPAPAAGVVTTSSGPLVSEVNEEAKTKDFLGWQLPELTKMAMDPVQFALSSNHRLEEDEDYDNEE

GO Analysis
1
GO Category Molecular Function
GO Term DNA binding
2
GO Category Cellular comBiological Processonent
GO Term nucleus
3
GO Category Biological Process
GO Term biosynthetic process
4
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
5
GO Category Cellular comBiological Processonent
GO Term cytosol
6
GO Category Molecular Function
GO Term sequence-specific DNA binding transcription factor activity
Presence of Splice variants No