LOC_Os05g41080

Expression Profile

RGAP LOCUS ID LOC_Os05g41080
RAP-DB ID Os05g0489800
Function histone H3, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 14

2) CELLO Prediction
localization Nuclear
score 3.251

3) NUCPRED Prediction
localization Non Nuclear
score 0.68

4) Y-Loc Prediction
localization Nuclear
score 90.17
confidence value 0.23
Number Of Software Predicting Nucleus 3
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) CENH3
Function assigned as per literature CENH3 is a key element of a functional centromere that can be used as an identification marker for functional centromeric chromatin
Subcellular localization as per literature Nucleus
Cells used for localization experiment Somatic chromosomes at mitosis prometaphase in variant YZG-5
NUCLEAR or Not Nuclear NUCLEAR
PMID 28577021
Reference of localization https://www.nature.com/articles/s41598-017-02796-9
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 1
Number of PAT7 2
Number of Bipartite 0
Basic residues % 0.206
NLS score 1.42
Protein Sequence >LOC_Os05g41080.1 protein
MARTKHPAVRKSKAEPKKKLQFERSPRPSKAQRAGGGTGTSATTRSAAGTSASAGTPRQQTKQRKPHRFRPGTVALREIRKFQKTTELLIPFAPFSRLVR
EITDFYSKDVSRWTLEALLALQEAAEYHLVDIFEVSNLCAIHAKRVTIMQKDMQLARRIGGRRPW

GO Analysis
1
GO Category Molecular Function
GO Term DNA binding
2
GO Category Molecular Function
GO Term protein binding
3
GO Category Biological Process
GO Term cellular component organization
4
GO Category Biological Process
GO Term DNA metabolic process
Presence of Splice variants YES