LOC_Os05g41070

Expression Profile

RGAP LOCUS ID LOC_Os05g41070
RAP-DB ID Os05g0489700
Function bZIP transcription factor, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 8

2) CELLO Prediction
localization Nuclear
score 3.308

3) NUCPRED Prediction
localization Non Nuclear
score 0.75

4) Y-Loc Prediction
localization Nuclear
score 99.04
confidence value 0.5
Number Of Software Predicting Nucleus 3
Seed Specific No
Transcription factor category bZIP

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) HBF1
Function assigned as per literature HBF1 endodes a floral repressors that reduce Hd3a and RFT1 expressionto delay flowering
Subcellular localization as per literature Nuclear localized when ineracting with Hd3a
Cells used for localization experiment Nicotiana benthamiana leaves
NUCLEAR or Not Nuclear NUCLEAR
PMID 29042404
Reference of localization http://www.plantcell.org/content/early/2017/10/17/tpc.17.00645
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 1
Number of Bipartite 1
Basic residues % 0.113
NLS score 0.45
Protein Sequence >LOC_Os05g41070.1 protein
MIQAMASHAGGSGGGGGGSGRDAGSAQRGPMQGLARQGSLYGLTLNEVQSQLGEPLLSMNLDELLKSVFPDGADLDGGGGGGGIAGQSQPALGLQRQGSI
TMPPELSKKTVDEVWKGIQDVPKRGAEEGGRWRRERQPTLGEMTLEDFLVKAGVVTDPNDLPGNMDVVGGAAAAAAGTSDLNAGAQWLQQYHQQALEPQH
PSIGAPYMATHLAPQPLAVATGAVLDPIYSDGQITSPMLGALSDPQTPGRKRCATGEIADKLVERRQKRMIKNRESAARSRARKQAYTNELENKVLRLEE
ENERLKKQKELDEILNSAPPPEPKYQLRRTSSAAF

GO Analysis
1
GO Category Molecular Function
GO Term DNA binding
2
GO Category Cellular comBiological Processonent
GO Term nucleus
3
GO Category Biological Process
GO Term biosynthetic process
4
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
5
GO Category Biological Process
GO Term response to stress
6
GO Category Molecular Function
GO Term sequence-specific DNA binding transcription factor activity
7
GO Category Biological Process
GO Term response to endogenous stimulus
Presence of Splice variants No