LOC_Os05g40980
| RGAP LOCUS ID | LOC_Os05g40980 | ||||
| RAP-DB ID | Os05g0488800 | ||||
| Function | zinc finger, C3HC4 type domain containing protein, expressed | ||||
Sub-cellular Localization Predictions |
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1) WoLF-PSORT Prediction |
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| localization | Nuclear | ||||
| score | 12 | ||||
2) CELLO Prediction |
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| localization | Nuclear | ||||
| score | 3.631 | ||||
3) NUCPRED Prediction |
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| localization | Non Nuclear | ||||
| score | 0.3 | ||||
4) Y-Loc Prediction |
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| localization | Nuclear | ||||
| score | 98.57 | ||||
| confidence value | 0.98 | ||||
| Number Of Software Predicting Nucleus | 3 | ||||
| Seed Specific | No | ||||
| Transcription factor category | |||||
Experimental evidence for subcellular localization |
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| Published gene name (updated 1 January 2020) | OsSIRP1 | ||||
| Function assigned as per literature | OsSIRP1 acts as a negative regulator of salinity stress tolerance mediated by the ubiquitin 26S proteasome system | ||||
| Subcellular localization as per literature | Cytoplasm | ||||
| Cells used for localization experiment | Rice protoplasts | ||||
| NUCLEAR or Not Nuclear | NOT NUCLEAR | ||||
| PMID | 27118216 | ||||
| Reference of localization | https://onlinelibrary.wiley.com/doi/epdf/10.1111/ppl.12459 | ||||
| Is Subcellular localization evidence by author available ? | No | ||||
Sequence Analysis |
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| Number of PAT4 | 2 | ||||
| Number of PAT7 | 0 | ||||
| Number of Bipartite | 0 | ||||
| Basic residues % | 0.074 | ||||
| NLS score | -0.1 | ||||
| Protein Sequence | >LOC_Os05g40980.1 protein MAEAAITRYWCHECEQAIEEAMVDEIKCPSCGGGFVEEMTDEEIERLTNRQPEPGFSQWNPIEHPGETMDSDDEDNDLGREFEGFIRRHRRASTLRRVLD SIHDDLADDQERDSSILINAFNQALALQGSVLDPDEGQGDQGGSTNDDGLLEEYVLGAGLSLLLQHLAESDPSRNGTPPAKKEAVEALPTVKIEEVVSCS VCLDDLEVGSQAKQMPCEHKFHSSCILPWLELHSSCPVCRFELPSEETKDLNEPSNIGRVEDSHEEVRADGPGNVSESSNRPWAIVPWLNELFSTREAQN AGGVSTDQQSPHTSGTNPNAGHS |
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GO Analysis |
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| 1 |
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| Presence of Splice variants | YES | ||||