LOC_Os05g40260

Expression Profile

RGAP LOCUS ID LOC_Os05g40260
RAP-DB ID Os05g0481000
Function acetyltransferase, GNAT family, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization chlo
score 14

2) CELLO Prediction
localization Mitochondrial
score 1.707

3) NUCPRED Prediction
localization Non Nuclear
score 0.16

4) Y-Loc Prediction
localization Chloroplast
score 9
confidence value 0.91
Number Of Software Predicting Nucleus 0
Seed Specific No
Transcription factor category GNAT

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsSNAT1
Function assigned as per literature OsSNAT1 is rice melatonin biosynthetic enzyme
Subcellular localization as per literature Chloroplasts
Cells used for localization experiment tobacco leaves
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 24134674
Reference of localization https://onlinelibrary.wiley.com/doi/abs/10.1111/jpi.12103
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.114
NLS score -0.47
Protein Sequence >LOC_Os05g40260.1 protein
MAPAASASASAVVTPSSFRCVPTASCGLGARGKAPAPRRLLHDHAQGKKRAAATWSLKAGLWDSLRSGFLKSNNSTETVEPPSAPIEEEEPLPEELVLLE
RTLADGSTEQIIFSSAGDVNVYDLQALCDKVGWPRRPLTKIAASLRNSYLVATLHSVTMPSKAEGEERKQLIGMARATSDHAFNATIWDVLVDPSYQGQG
LGKALMEKVIRTLLQRDISNITLFADNKVVDFYKNLGFEADPQGIKGMFWYPRF

GO Analysis
1
GO Category Cellular comBiological Processonent
GO Term nucleus
2
GO Category Biological Process
GO Term metabolic process
3
GO Category Biological Process
GO Term reproduction
4
GO Category Molecular Function
GO Term transferase activity
5
GO Category Biological Process
GO Term biological_process
6
GO Category Cellular comBiological Processonent
GO Term plastid
Presence of Splice variants No