LOC_Os05g39930

Expression Profile

RGAP LOCUS ID LOC_Os05g39930
RAP-DB ID Os05g0476700
Function spotted leaf 11, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization chlo
score 11

2) CELLO Prediction
localization Chloroplast
score 2.176

3) NUCPRED Prediction
localization Non Nuclear
score 0.39

4) Y-Loc Prediction
localization Nuclear
score 58.66
confidence value 0.05
Number Of Software Predicting Nucleus 1
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsPUB2
Function assigned as per literature OsPUB2 is involved in the positive regulation of low temperature stress response in rice
Subcellular localization as per literature EXPO-like punctate bodies and nuclei
Cells used for localization experiment Tobacco (N. benthamiana) leaves
NUCLEAR or Not Nuclear NUCLEAR
PMID 28163713
Reference of localization https://www.frontiersin.org/articles/10.3389/fpls.2017.00016/full
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.121
NLS score -0.47
Protein Sequence >LOC_Os05g39930.1 protein
MANARNAAAASPPPPSSSSSYSSSASDGEILRSLHRLARDLAAAEAPAPFLETVFAAVSRRAKLLAAVFDDLLRCGRLPRSASLCLREVLLVLQRFKAVV
ADCSARSRMRLLLQADEVAARVRELQHDLATLLDLLPVPELGLADDVVDLLALASRQCRRSSPSADAAEHELKTGVLALIQEVEREIVPERERLEGILEE
VGINDPACCSDEIETLEREIGDRVAERWTSAMIALVGLLRYAKCVLFTAATPRPMDTKVDVDDDDDDDDAEPPSPPPDFRCPISLDLMRDPVVSASGQTY
DRESITRWFGSGKSTCPKTGQVLANLELVPNKALKNLISRWCRENGVAMESSEPSKPEPAPVVTANKAALEAARMTASFLVKKLSVSFSPAAANRVVHEI
RQLARSGNDTRAFIGEAGAVPLLVPLLHSDDTATQLNAVTALLNLSILDANKKRIMHAEGAVEAICHAMGSGATWRAKENAAATVLSLASVHSYRRRLGR
NPRVVERVVHLVRTGPSSTKKDAIAALLCLSGERENVGKLVEAGAAEAALSAISEEETAVAVLASLAKRGGAEAIVNIDGAVVRLVAELRRGTEWSRECA
AAALVLLCRRVGAAVVAQVMSVSGVEWAIWELMATGTERARRKAASLGRACRRWAAAEQTAEYPATSDVTTTAITAS

GO Analysis
1
GO Category Biological Process
GO Term biological_process
2
GO Category Cellular comBiological Processonent
GO Term intracellular
3
GO Category Biological Process
GO Term protein modification process
4
GO Category Molecular Function
GO Term binding
5
GO Category Molecular Function
GO Term catalytic activity
Presence of Splice variants No