LOC_Os05g38820

Expression Profile

RGAP LOCUS ID LOC_Os05g38820
RAP-DB ID Os05g0463800
Function histone-like transcription factor and archaeal histone, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization cysk
score 8

2) CELLO Prediction
localization Nuclear
score 3.083

3) NUCPRED Prediction
localization Non Nuclear
score 0.19

4) Y-Loc Prediction
localization Nuclear
score 99
confidence value 0.39
Number Of Software Predicting Nucleus 2
Seed Specific No
Transcription factor category CCAAT/NF_YB

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsHAP3B
Function assigned as per literature
Subcellular localization as per literature NA
Cells used for localization experiment
NUCLEAR or Not Nuclear
PMID
Reference of localization
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.126
NLS score -0.47
Protein Sequence >LOC_Os05g38820.4 protein
MADGPGSPGGGGGSHESGSPRGGGGGGGGGGGGGGVREQDRFLPIANISRIMKKAIPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGD
DLLWAMATLGFEDYIEPLKVYLQKYREVRTDVDVWNWGDSLLI

GO Analysis
1
GO Category Cellular comBiological Processonent
GO Term nucleus
2
GO Category Biological Process
GO Term biosynthetic process
3
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
4
GO Category Cellular comBiological Processonent
GO Term intracellular
5
GO Category Molecular Function
GO Term sequence-specific DNA binding transcription factor activity
Presence of Splice variants No