LOC_Os05g37470

Expression Profile

RGAP LOCUS ID LOC_Os05g37470
RAP-DB ID Os05g0447200
Function transmembrane amino acid transporter protein, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization plas
score 7

2) CELLO Prediction
localization PlasmaMembrane
score 4.972

3) NUCPRED Prediction
localization Non Nuclear
score 0.02

4) Y-Loc Prediction
localization Nuclear
score 40.89
confidence value 0.26
Number Of Software Predicting Nucleus 1
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsAUX3
Function assigned as per literature OsAUX3 plays a critical role in the regulation of root development in rice
Subcellular localization as per literature Plasma membrane
Cells used for localization experiment Rice protoplasts and tobacco epidermal cells
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 30399648
Reference of localization https://onlinelibrary.wiley.com/doi/abs/10.1111/pce.13478
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.062
NLS score -0.47
Protein Sequence >LOC_Os05g37470.1 protein
MVPAGDQAEEAIVADAGKEEAEVRAAMGVEQDGKFSMTSLLWHGGSVWDAWFSCASNQVRPTTNDLVMPLAHISFGILQVAQVLLTLPYSFSQLGMLSGL
LLQVFYGLMGSWTAYLISVLYVEYRARKEKEGVSFKNHVIQWFEVLDGLLGPYWKAAGLAFNCTFLLFGSVIQLIACASNIYYINDRLDKRTWTYIFGAC
CSTTVFIPSFHNYRIWSFLGLGMTTYTAWYLAIAAAVHGQVDGVTHSGPSKMVLYFTGATNILYTFGGHAVTVEIMHAMWKPQKFKYIYLVATLYVFTLT
LPSASAMYWAFGDALLTHSNAFSLLPRSGWRDAAVILMLIHQFITFGFACTPLYFVWEKAIGMHGTRSVLTRALARLPIVVPIWFLAIIFPFFGPINSAV
GALLVSFTVYIIPSLSHILTYRSASARLNAAEKPPPFLPSWSGMFVVNVFVVAWVLVVGFGLGGWASVTNFIKQIDTFGLFAKCYQCPPRAHAGAPLPAP
PRH

GO Analysis
1
GO Category Cellular comBiological Processonent
GO Term membrane
2
GO Category Biological Process
GO Term response to endogenous stimulus
3
GO Category Biological Process
GO Term response to abiotic stimulus
4
GO Category Biological Process
GO Term tropism
5
GO Category Biological Process
GO Term anatomical structure morphogenesis
6
GO Category Biological Process
GO Term post-embryonic development
7
GO Category Biological Process
GO Term transport
8
GO Category Biological Process
GO Term cellular process
9
GO Category Cellular comBiological Processonent
GO Term plasma membrane
10
GO Category Molecular Function
GO Term binding
11
GO Category Biological Process
GO Term response to biotic stimulus
12
GO Category Cellular comBiological Processonent
GO Term endosome
13
GO Category Cellular comBiological Processonent
GO Term cell
14
GO Category Biological Process
GO Term cell differentiation
15
GO Category Biological Process
GO Term multicellular organismal development
16
GO Category Molecular Function
GO Term transporter activity
17
GO Category Cellular comBiological Processonent
GO Term Golgi apparatus
Presence of Splice variants YES