LOC_Os05g37350

Expression Profile

RGAP LOCUS ID LOC_Os05g37350
RAP-DB ID Os05g0445900
Function hhH-GPD superfamily base excision DNA repair protein, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 13

2) CELLO Prediction
localization Nuclear
score 4.066

3) NUCPRED Prediction
localization Nuclear
score 1

4) Y-Loc Prediction
localization Nuclear
score 93.07
confidence value 0.26
Number Of Software Predicting Nucleus 4
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) DNG701
Function assigned as per literature role in promoting Tos17 transposition in rice calli.
Subcellular localization as per literature Nucleus
Cells used for localization experiment rice protoplasts
NUCLEAR or Not Nuclear NUCLEAR
PMID 21896764
Reference of localization https://www.nature.com/articles/cr2012151
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 8
Number of PAT7 2
Number of Bipartite 1
Basic residues % 0.114
NLS score 2.83
Protein Sequence >LOC_Os05g37350.1 protein
MAKDENPSYLHLIFLSSRIRVFILDPPLSLPLSHGQCELQVVEEAAMDPSGLNLQGNPAENQESWTSGVSVGRGTPNLGVGTAVAGRSCPSSTLFPGSSL
SSTALLNTMHEGSFPQTALVAGSVSSADEQHGAPPVRPSYNLPAGCTQVPISILVFHRRLTGRGSRCRSPQSRSFMPAPALSGVSEDGAYGPIPQSDFLS
LRGPSEVFPGDMAMNHSEPATSYGYNSEYAPMHLQPNGLYTEASNTESEREASQLQQSAEAVICDSLSKLESAMEKIQGQNPQESSGLVAEGSADDNIHK
YHQKAKRARTQITHSDKIDLPTQAVSACKEKTITQIEMQIADAERTEALKGEDAPAQKLKTRRRKHRPKVIREDRPAKKQMATTSEEKPLNQKPKRKYVR
KNRNPSSLEKCAEPFSDHSISRESRTTVRSSIASVRRRLQFEFGEHGVQRDQSSMTNSWYQNQEKPVNAESSLCSVTKSSVQVEHGQELHMENSPEGLFF
GINSKLNKILDEYIHLPEAAPKPSEQIPLAASGHVSEELARKQYDVRHTHDPDSTSYNIERSGLITTKGHKKDLDLNYSNTNGFQMYCSASLLPEMDSTK
GSMTKVSKMDKNKKRHYGGESSLAGTQSSIIMRTAAEMLAVYQACGIKKKRSARVRRNSFLSVMDLEKNTSQESTRLPRSCMEALYESSYIKFMTKKRSQ
KARLNSPNSIQPNIDQKNRFSSETVFSGGFNGLKRSEETFQKTLPQIPDDKRINLDIHCKVPVESSPNTSTPPYMDYLQGVTSKFRYFDLNTEQVHKTEM
HLSQTMPSLSSLGATNYLPNALVPYVGGAVVPYQTQFHLVKKQRPRAKVDLDFETTRVWNLLMGKAADPVDGTDVDKERWWKQEREVFQGRANSFIARMR
LVQGDRRFSPWKGSVVDSVVGVFLTQNVADHLSSSAYMALAASFPTGSHGNCNDGIAGQDNEEIISTSAVGDRGTFEFFYNGSRPDIGLNFEFSMACEKI
HMEPKDNTTVNELTKGENYSLHCKESAGSLCDHETEIDHKAKSISDFSAVELTACMKNLHATQFQKEISLSQSVVTSESILQPGLPLSSGMDHARRNFVG
SISDTASQQVGSNFDDGKSLTGNDVTANETEYHGIKAAATNNYVVDEPGIPSGSSLYPFFSAIDCHQLDGRNDTHVSSTSPNCSICSASSNFKIGTIEEN
SSLFMPFDAHLAQRNGNMIVDTNLSSALESTELPVKLLHCGKRSCYEASEFQDHESLYATGGVIPETATKADDSTLKSGFASFNGLPDTAAQASKPKKSR
TTSKKNSENFDWDKLRRQACGNYQMKERIFDRRDSVDWEAVRCADVQRISHAIRERGMNNVLAERIQKFLNRLVTDHGSIDLEWLRDVPPDSAKDYLLSI
RGLGLKSVECVRLLTLHHLAFPVDTNVGRICVRLGWVPIQPLPESLQLHLLELYPVLETIQKYLWPRLCKLDQQTLYELHYQMITFGKVFCTKSKPNCNA
CPMRSECRHFASAFASARLALPSPQDKRLVNLSNQFAFHNGTMPTPNSTPLPQLEGSIHARDVHANNTNPIIEEPASPREEECRELLENDIEDFDEDTDE
IPIIKLNMEAFSQNLENCIKESNKDFQSDDITKALVAISNEAASIPVPKLKNVHRLRTEHYVYELPDSHPLMQQLALDQREPDDPNELKDTREAPKPCCN
PQTEGGLCSNEMCHNCVSERENQYRYVRGTVLVPCRTAMRGSFPLNGTYFQVNEVFADHSSSHNPINIPREQLWNLHRRMVYFGTSVPTIFKGLTTEEIQ
HCFWRGFVCVRGFNMETRAPRPLCPHFHLAASKLRRSSKKAATEQTH

GO Analysis
1
GO Category Biological Process
GO Term regulation of gene expression, epigenetic
2
GO Category Biological Process
GO Term biosynthetic process
3
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
4
GO Category Molecular Function
GO Term catalytic activity
5
GO Category Cellular comBiological Processonent
GO Term nucleus
6
GO Category Biological Process
GO Term metabolic process
7
GO Category Biological Process
GO Term response to stress
8
GO Category Biological Process
GO Term DNA metabolic process
9
GO Category Molecular Function
GO Term protein binding
10
GO Category Molecular Function
GO Term hydrolase activity
Presence of Splice variants No