LOC_Os05g35520

Expression Profile

RGAP LOCUS ID LOC_Os05g35520
RAP-DB ID Os05g0430200
Function deoxynucleoside kinase family, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization chlo
score 11

2) CELLO Prediction
localization Mitochondrial
score 1.628

3) NUCPRED Prediction
localization Non Nuclear
score 0.67

4) Y-Loc Prediction
localization Mitochondrion
score
confidence value 0.57
Number Of Software Predicting Nucleus 0
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) WSL8|OsdNK1
Function assigned as per literature WSL8 plays an important role in early chloroplast development in rice
Subcellular localization as per literature Chloroplast
Cells used for localization experiment tobacco leaves
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 31485784
Reference of localization https://link.springer.com/article/10.1007/s00299-019-02470-6
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 1
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.129
NLS score -0.16
Protein Sequence >LOC_Os05g35520.1 protein
MHRLSFLQATIIDAPLLLSSASMATVPALRLGSPAALLAARRPPRWLRCGGGGVGGGGGGVGVARRGMACSVEALARRGGGGESESENEEEEEKRRGRAG
ERRLRGGGSAAAAAAAAGSGELLSIPGVGPRNQRKLVDNGFEGVAQLKQLYRDKFFGKYSEKMVEFLQSSVGIIHKNHAESITSFIKESVDEELKDADSS
KASQKKRLTFCVEGNISVGKSTFLQRIANETIELRDLVEIVPEPVAKWQDIGPDHFNILDAFYAEPHRYAYTFQNYVFVTRVMQERESSGGIKPLRLMER
SVFSDRMVFVRAVHEANWMNEMEISIYDSWFDPVVSSLPGLIPDGFIYLRASPDTCHKRMMLRKRAEEGGVTLDYLQGLHEKHESWLLPSKGGGTGVLSV
SQLPTHLEGSLPPAIRDRVFYLEGDHMHSSIQKVPALVLDCEPDIDFNKDIEAKRQYAQQVAEFFQFVKKKKEAPSEQTSTDKNRINPQIMLPHKGGLWV
PDGRNPFSGSAMNLNFRRAMSSYLST

GO Analysis
1
GO Category Cellular comBiological Processonent
GO Term nucleus
2
GO Category Molecular Function
GO Term nucleotide binding
3
GO Category Molecular Function
GO Term transferase activity
4
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
Presence of Splice variants YES