LOC_Os05g35400

Expression Profile

RGAP LOCUS ID LOC_Os05g35400
RAP-DB ID Os05g0428600
Function DnaK family protein, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization chlo
score 9

2) CELLO Prediction
localization Chloroplast
score 2.091

3) NUCPRED Prediction
localization Non Nuclear
score 0.12

4) Y-Loc Prediction
localization Mitochondrion
score
confidence value 0.81
Number Of Software Predicting Nucleus 0
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsBiP4
Function assigned as per literature OsBiP4 is a ER stress-related BiP protein that is regulated by OsIRE1/OsbZIP50 pathway
Subcellular localization as per literature Endoplasmic reticulum and at the periphery of ER-derived protein body-I (PB-I)
Cells used for localization experiment Rice wild-type seeds
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 22824965
Reference of localization https://link.springer.com/article/10.1007%2Fs00425-012-1714-y
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 3
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.128
NLS score 0.15
Protein Sequence >LOC_Os05g35400.1 protein
MARPRRASTATTMQLGLLLAALLLFTSSLAGSVAAAAPPPPAGAKGGGAKSGGGGGTVIGIDLGTTYSCVGVYRNDRVEIIANDQGNRITPSWVAFTDGG
ERLIGEAAKNQAAANPERTIYDAKRLIGRQFSDAEVQRDMKLLPFAVVDRNGKPHVRVEVKDGDVRVFSPEEVSAMVLTRMKETAEAYLGEKVTRAVVTV
PAYFNDAQRQATKDAGVIAGLTVDRIINEPTAAAIAYGIDKKGAEKNVLVFDLGGGTFDVSILAIDNGVFEVLATNGDTHLGGEDFDQRLMDHFVKVIRR
KHGRDIAGDARALGKLRRECERAKRALSNQHQVRVEIESLFDGVDFSEPLSRARFEELNGDLFKKTMVPVRKAMADAGLGKGDIDEIVLVGGSTRIPKVQ
QLLKDYFGGKEPNRGVNPDEAVAYGAAVQASIISGHVDENTESMILLDVAPLTLGLETAGGVMTKLIPRNTVVPTKKTQVFTTYKDRQTTVTIQVFEGER
SMTRDNRLLGKFDLTGIAPAPRGAPQIAVTFEVDANGILSVLAADKATGRSEKITISGDDRKISQEEIDRMVREAEEFADEDRRHREQVDARNSLEAYVY
NVKSTLGGKMADAMEGEEKEKVEEAVREAHEWLDGNPDAGKEEYEEKLRELEDVCNPVMSAVYQRSGGGGGAPEDGNVDDEDDHDEL

GO Analysis
1
GO Category Biological Process
GO Term protein metabolic process
2
GO Category Biological Process
GO Term cellular process
3
GO Category Cellular comBiological Processonent
GO Term membrane
4
GO Category Cellular comBiological Processonent
GO Term endoplasmic reticulum
5
GO Category Cellular comBiological Processonent
GO Term nucleus
6
GO Category Molecular Function
GO Term nucleotide binding
7
GO Category Cellular comBiological Processonent
GO Term cellular_component
8
GO Category Biological Process
GO Term response to stress
9
GO Category Biological Process
GO Term response to abiotic stimulus
10
GO Category Cellular comBiological Processonent
GO Term vacuole
11
GO Category Biological Process
GO Term biological_process
12
GO Category Cellular comBiological Processonent
GO Term cell wall
13
GO Category Cellular comBiological Processonent
GO Term nucleolus
14
GO Category Biological Process
GO Term cellular component organization
15
GO Category Biological Process
GO Term cell differentiation
16
GO Category Biological Process
GO Term multicellular organismal development
17
GO Category Cellular comBiological Processonent
GO Term plasma membrane
Presence of Splice variants No