| RGAP LOCUS ID |
LOC_Os05g35170 |
| RAP-DB ID |
Os05g0426200 |
| Function |
no apical meristem protein, putative, expressed |
Sub-cellular Localization
Predictions |
1) WoLF-PSORT Prediction |
| localization |
Nuclear |
| score |
9 |
2) CELLO
Prediction
|
| localization |
Nuclear |
| score |
1.319 |
3) NUCPRED
Prediction
|
| localization |
Non Nuclear |
| score |
0.28 |
4) Y-Loc
Prediction
|
| localization |
Nuclear |
| score |
72.92 |
| confidence value |
0.15 |
| Number Of Software Predicting Nucleus |
3 |
| Seed Specific |
No |
| Transcription factor category |
NAC |
Experimental evidence for
subcellular localization |
| Published gene name (updated 1 January 2020) |
IDEF2 |
| Function assigned as per literature |
IDEF2 functions as a key transcription factor regulating the iron-deficiency response |
| Subcellular localization as per literature |
Nucleus |
| Cells used for localization experiment |
Onion epidermal cells |
| NUCLEAR or Not Nuclear |
NUCLEAR |
| PMID |
18308732 |
| Reference of localization |
http://www.jbc.org/content/283/19/13407.long |
| Is Subcellular localization evidence by author available ?
|
No |
Sequence Analysis
|
| Number of PAT4 |
0 |
| Number of PAT7 |
1 |
| Number of Bipartite |
0 |
| Basic residues % |
0.078 |
| NLS score |
-0.04 |
| Protein Sequence |
>LOC_Os05g35170.1 protein
MAQTCLPPGFRFHPTDVELVSYYLKRKIMGKKPLIQAISDVELYKFAPWDLPAQSCLQSRDLEWFFFCPRDKKYPNGSRTNRSTPNGYWKTSGKDRTIEL
NSRIVGSKKTLIFHEGKAPKGNRTDWVMYEYKMEDNQLVSAGFSKDDFVLCKIFKKSGLGPRIGEQYGAPFNEEEWEHADAEMFPLLPNVETSVFPLLPS
SEVVNSTDDTRVQPSVAARAIEELPVQHLPHVCAGNGSTYQNITVTGESALMELPSQHSVESIGDEVVSVDNCSNVVNNADSPVIEGLVLEELSRFLTDS
PHHGNPVGEHSGLPPMSEAEAHAFEVSTNDLYNEIAGLAELGVPNGDGFSPSNAGVTEQQPTYFGVPNSENYVNMDDIFAPDTRLSYAYPLPNNQFWHYP
MDQFTYSTTLSAAFPSGDSRPTMRIVDDLPAAANNGGFASKPSMQFPLS |
GO Analysis |
| 1 |
| GO Category |
Biological Process |
| GO Term |
response to abiotic stimulus |
|
| 2 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
nucleus |
|
| 3 |
| GO Category |
Biological Process |
| GO Term |
biosynthetic process |
|
| 4 |
| GO Category |
Biological Process |
| GO Term |
nucleobase, nucleoside, nucleotide and nucleic acid metabolic process |
|
| 5 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
cytoplasm |
|
| 6 |
| GO Category |
Biological Process |
| GO Term |
cellular process |
|
| 7 |
| GO Category |
Biological Process |
| GO Term |
secondary metabolic process |
|
| 8 |
| GO Category |
Biological Process |
| GO Term |
multicellular organismal development |
|
| 9 |
| GO Category |
Molecular Function |
| GO Term |
sequence-specific DNA binding transcription factor activity |
|
| Presence of Splice variants |
YES |
