LOC_Os05g35050

Expression Profile

RGAP LOCUS ID LOC_Os05g35050
RAP-DB ID Os05g0424700
Function ctr copper transporter family protein, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 9

2) CELLO Prediction
localization PlasmaMembrane
score 2.305

3) NUCPRED Prediction
localization Non Nuclear
score 0.09

4) Y-Loc Prediction
localization Chloroplast
score 9
confidence value 0.45
Number Of Software Predicting Nucleus 1
Seed Specific Yes
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) COPT5
Function assigned as per literature COPT5 is associated with Cu uptake and redistribution in rice
Subcellular localization as per literature Plasma Membrane
Cells used for localization experiment MPY17 cells
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 20852017
Reference of localization http://www.plantcell.org/content/22/9/3164.long
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 1
Number of Bipartite 0
Basic residues % 0.113
NLS score -0.13
Protein Sequence >LOC_Os05g35050.1 protein
MDMGGNGMAMPPPPAPVKKARYMHMTFFWGKNTEVLFTLWPGARGGMYALAILFMFALAVLLEFRGYRVLEARLARRRAPRAAAALRTAVHAVRVGVAYL
IMLALMSFNGGVFLAIVAGHAAGFLAFRAGLCGGGPAPPLEEDRKNDPVCC

GO Analysis
1
GO Category Biological Process
GO Term transport
2
GO Category Biological Process
GO Term cellular process
3
GO Category Cellular comBiological Processonent
GO Term membrane
4
GO Category Biological Process
GO Term reproduction
5
GO Category Biological Process
GO Term cell differentiation
6
GO Category Biological Process
GO Term multicellular organismal development
7
GO Category Molecular Function
GO Term transporter activity
Presence of Splice variants No