| RGAP LOCUS ID |
LOC_Os05g34730 |
| RAP-DB ID |
Os05g0420300 |
| Function |
ethylene-responsive transcription factor ERF020, putative, expressed |
Sub-cellular Localization
Predictions |
1) WoLF-PSORT Prediction |
| localization |
chlo |
| score |
10 |
2) CELLO
Prediction
|
| localization |
Nuclear |
| score |
1.794 |
3) NUCPRED
Prediction
|
| localization |
Non Nuclear |
| score |
0.27 |
4) Y-Loc
Prediction
|
| localization |
Nuclear |
| score |
97.6 |
| confidence value |
0.46 |
| Number Of Software Predicting Nucleus |
2 |
| Seed Specific |
No |
| Transcription factor category |
AP2-EREBP |
Experimental evidence for
subcellular localization |
| Published gene name (updated 1 January 2020) |
SERF1 |
| Function assigned as per literature |
SERF1 regulates reactive oxygen species-dependent signaling during the initial response to salt stress in rice |
| Subcellular localization as per literature |
Nucleus and cytiplasm |
| Cells used for localization experiment |
Rice leaf epidermal cells |
| NUCLEAR or Not Nuclear |
NUCLEAR |
| PMID |
23800963 |
| Reference of localization |
http://www.plantcell.org/content/25/6/2115.long |
| Is Subcellular localization evidence by author available ?
|
No |
Sequence Analysis
|
| Number of PAT4 |
1 |
| Number of PAT7 |
0 |
| Number of Bipartite |
0 |
| Basic residues % |
0.127 |
| NLS score |
-0.16 |
| Protein Sequence |
>LOC_Os05g34730.1 protein
MGRVAASGGGGGGGEMMRYRGVRRRRWGKWVSEIRVPGTRERLWLGSYATAEAAAVAHDAAVCLLRLGGGRRAAAGGGGGLNFPARALAAAAAASSYGGA
GGLLSPRSVQRVASDAGMAADAQLVDLRRDHPPAAAAASSSGSGVAGDGARKQGTRGEVSDTYWCRNGEDGSRSRSSGSEELIVYEGLSVDDMEILM |
GO Analysis |
| 1 |
| GO Category |
Molecular Function |
| GO Term |
DNA binding |
|
| 2 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
nucleus |
|
| 3 |
| GO Category |
Biological Process |
| GO Term |
biosynthetic process |
|
| 4 |
| GO Category |
Biological Process |
| GO Term |
nucleobase, nucleoside, nucleotide and nucleic acid metabolic process |
|
| 5 |
| GO Category |
Molecular Function |
| GO Term |
sequence-specific DNA binding transcription factor activity |
|
| 6 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
cytoplasm |
|
| Presence of Splice variants |
No |
