LOC_Os05g34460

Expression Profile

RGAP LOCUS ID LOC_Os05g34460
RAP-DB ID Os05g0417100
Function OsDegp7 - Putative Deg protease homologue, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization chlo
score 13

2) CELLO Prediction
localization Chloroplast
score 2.536

3) NUCPRED Prediction
localization Non Nuclear
score 0.14

4) Y-Loc Prediction
localization Chloroplast
score 7
confidence value 0.36
Number Of Software Predicting Nucleus 0
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) TCM5
Function assigned as per literature TCM5 has role in chloroplastdevelopment under high temperatures
Subcellular localization as per literature Chloroplast
Cells used for localization experiment tobacco cells
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 27000876
Reference of localization https://thericejournal.springeropen.com/track/pdf/10.1186/s12284-016-0086-5
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 1
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.107
NLS score -0.29
Protein Sequence >LOC_Os05g34460.1 protein
MLASVRSLRRLSSSSSSSSLSPASLRRLLLLLHRPPPPPPPPRPPLPPFQTLARGILPRIAARPVPRRFSTASCSSTLFRVGECGAPGATAIPEAERGEE
EEREGEDGGEADAAVEVAAGRHDTDAYAAVELALDSVVKVFTVSSSPNYFLPWQNKAQRESMGSGFVIPGRRIITNAHVIADHTFVLVRKHGSPTKYKAE
VQAVGHECDLALLKVDSEEFWDGMNSLELGDIPFLQEAVAVVGYPQGGDNISVTKGVVSRVEPTQYAHGATQLMAIQIDAAINPGNSGGPAIMGDKVAGV
AFQNLSGAENIGYIIPVPVIKRFISGVEESGKYSGFCTLGISCQATENIQLRECFGMKPDLTGVLVSRINPLSDAHRVLKKDDILLEFDGVPIANDGTVP
FRNRERITFDHLVSMKKPGEMAVLKVLRDGKEHELNVTVRPLQPLVPVHQFDKLPSYYIFAGFVFIPLTQPYLHEFGEDWYNNSPRRLCERALRELPKKA
AEQLVILSQVLMDDINVGYERLAELQVKKVNGVEVENLKHLCSLVESCTEENLRFDLDDERVIVLKYQNAKLATSRILKRHRIPSAISADLVDEQATDDG
EEATNGEIEASCTS

GO Analysis
1
GO Category Molecular Function
GO Term hydrolase activity
2
GO Category Biological Process
GO Term protein metabolic process
3
GO Category Molecular Function
GO Term catalytic activity
Presence of Splice variants No