LOC_Os05g34050

Expression Profile

RGAP LOCUS ID LOC_Os05g34050
RAP-DB ID Os05g0411300
Function bZIP transcription factor domain containing protein, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 7

2) CELLO Prediction
localization Nuclear
score 3.657

3) NUCPRED Prediction
localization Non Nuclear
score 0.61

4) Y-Loc Prediction
localization Nuclear
score 100
confidence value 1
Number Of Software Predicting Nucleus 3
Seed Specific No
Transcription factor category bZIP

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsbZIP39
Function assigned as per literature Regulation of several ER stress response genes
Subcellular localization as per literature cytoplasm and the nucleus
Cells used for localization experiment Rice protoplast cells
NUCLEAR or Not Nuclear NUCLEAR
PMID 22084314
Reference of localization https://academic.oup.com/pcp/article/53/1/144/1821321
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 1
Number of PAT7 0
Number of Bipartite 2
Basic residues % 0.115
NLS score 0.83
Protein Sequence >LOC_Os05g34050.1 protein
MAEPALLDPTAAFDLRLYPAHLFDHELPLAGGGGGDDDDDLPLDGLEFDLPGDFSVEDFLLRSPERDDSGEGSAAGSGPTASPSSSPTTSASNSAVANGS
GGEVKHEESDEGRSGGGDPKWSLKRKQASPGPSSDAAKCRRSGDGDVSPSASASRTAVDSDEGGTVCEEEEDERRAARLMRNRESAQLSRQRKKRYVEEL
EEKVKSMHSVINDLNSRISFVVAENATLRQQLSGGSVNCPPPGVYPPAPIPGMHFPWMPGYAMRPPGSHVPLVPIPRLKPQQPVPSSKVVKKPESKKTVE
NKSKSKTKTKKVASVSLLGLLLIMLVFGAFIPGFNHNFGMCGQSDNAMFRNFGQSHARVLSVSSQDKSSLNNSDMIGVDVGKMTGNTDGPGKKHQPAHNS
SEILPALLYVPRNGKHVKINGNLIIHSVLASEKAVAHKASKDDSDQSARDHKETSVAIARYLSLPGKDVNRQETSSADGPLPQWFREGMEGPILNSGMCS
EVFQFDISTASSNPGGIIPASPVVNSSSVNATEKIPAHSAAYHGKLKNRRVMYNEAIPLTGKTANNTEPFNRTSESSSKLPDSKPASSVVVSVLADPREA
GNGDGDPRVSPKPLSKIFVVVLVDGVRYVTYSCTLPFKSSSPHLVN

GO Analysis
1
GO Category Molecular Function
GO Term DNA binding
2
GO Category Cellular comBiological Processonent
GO Term nucleus
3
GO Category Cellular comBiological Processonent
GO Term endoplasmic reticulum
4
GO Category Biological Process
GO Term biosynthetic process
5
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
6
GO Category Biological Process
GO Term response to stress
7
GO Category Biological Process
GO Term response to abiotic stimulus
8
GO Category Molecular Function
GO Term sequence-specific DNA binding transcription factor activity
Presence of Splice variants No