LOC_Os05g34040

Expression Profile

RGAP LOCUS ID LOC_Os05g34040
RAP-DB ID Os05g0411200
Function monooxygenase, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization chlo
score 13

2) CELLO Prediction
localization Mitochondrial
score 1.556

3) NUCPRED Prediction
localization Non Nuclear
score 0.44

4) Y-Loc Prediction
localization Chloroplast
score 7
confidence value 0.03
Number Of Software Predicting Nucleus 0
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) TCD5|CSV1|TSV
Function assigned as per literature TCD5 gene is essential for chloroplast differentiation during early leaf development under cold stress
Subcellular localization as per literature Chloroplast
Cells used for localization experiment Arabidopsis mesophyll cells
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 27531886
Reference of localization https://academic.oup.com/jxb/article/67/17/5187/2197832
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 4
Number of PAT7 3
Number of Bipartite 2
Basic residues % 0.119
NLS score 2.66
Protein Sequence >LOC_Os05g34040.1 protein
MALAAASVSVLHLPAISLPLPCLQGSNPSRPSLGLTNALPWRRRGGRGAGAVAGAVRCAKRTGKRRYPSEKKRLDRRHKELLRKAAPEEGSAGREAGYWR
LSKLAVPARDDPGKDFAGVSPPLLQAIAKALKFPVSSMLPEEAFTVIRKSFDARKILKEPQFVYTVDVAVKRLLDLEPRTWDFIARLEPKLGTIEYMPDE
KVASDLVSMLNVYKQGSDGELGINDTVNNGSICSPRKKPRVAVVGSGPSGLFASLVLGELGAEVTLIERGQPVEQRGRDIGALVVRRILHSESNFCFGEG
GAGTWSDGKLVTRIGRNTDGVQAVMKTFVQFGGPPNILVDGKPHLGTDKLVPLLRNFRHHLKELGVNIIFNTRVDDLVVEGGQVKGVVVSDSRLQLGSPN
QTLSFDAVVLAVGHSARDTYSMLLRHNVDMHPKSFAVGLRIEHPQELINDIQYSELAAEVHKGRGRIPVADYKIVKSFGEGDAELPEQNRSCYSFCMCPG
GQVVLTSTNPSELCINGMSFSRRASKWANSAFVATVSSHDFRPFESHGSLAGVEFQREFERRAATMGGGNFVVPAQCVTDFLSNRLSVTTLPPSSYRLGV
RPSKLHELFPSHITEVLQQSIIMIEEEMPGFVSSEALLHGVETRTSSPLQISRNTGTYESTSLQGLYPIGEGAGYAGGILSASVDGMYCGFALAKQLSLF
HGDIESTLGKAQNQKGFVKY

GO Analysis
1
GO Category Molecular Function
GO Term binding
2
GO Category Biological Process
GO Term metabolic process
3
GO Category Biological Process
GO Term photosynthesis
4
GO Category Molecular Function
GO Term catalytic activity
5
GO Category Cellular comBiological Processonent
GO Term plastid
Presence of Splice variants YES