LOC_Os05g33810

Expression Profile

RGAP LOCUS ID LOC_Os05g33810
RAP-DB ID Os05g0408200
Function OsSPL9 - SBP-box gene family member, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 8

2) CELLO Prediction
localization Nuclear
score 2.519

3) NUCPRED Prediction
localization Non Nuclear
score 0.71

4) Y-Loc Prediction
localization Nuclear
score 100
confidence value 0.99
Number Of Software Predicting Nucleus 3
Seed Specific No
Transcription factor category SBP

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsSPL9
Function assigned as per literature Overexpression of OsSPL9 enhances accumulation of Cu in rice grain and improves its digestibility and metabolism
Subcellular localization as per literature Nucleus
Cells used for localization experiment Nicotiana benthamiana leaves
NUCLEAR or Not Nuclear NUCLEAR
PMID 27876244
Reference of localization https://www.sciencedirect.com/science/article/pii/S1673852716301400?via%3Dihub
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 7
Number of PAT7 1
Number of Bipartite 1
Basic residues % 0.107
NLS score 2.66
Protein Sequence >LOC_Os05g33810.1 protein
MDAPGGGGGGGGGGGGVDAGEPVWDWGNLLDFAVHDDDSLVLPWGDDSIGIEADPAEAALLPPAPSPQPAEAEAEAAGPASLPSSMQAEGSKRRVRKRDP
RLVCPNYLAGRVPCACPEIDEMAAALEVEDVATELLAGARKKPKGAGRGSGAAVGGSGGGASRGTPAEMKCQVPGCEADIRELKGYHRRHRVCLRCAHAA
AVMLDGVQKRYCQQCGKFHILLDFDEDKRSCRRKLERHNKRRRRKPDSKGILEKDIDDQLDFSADGSGDGELREENIDVTTSETLETVLSNKVLDRETPV
GSDDVLSSPTCAQPSLQIDQSKSLVTFAASVEACLGTKQENTKLTNSPVHDTKSTYSSSCPTGRVSFKLYDWNPAEFPRRLRHQIFEWLSSMPVELEGYI
RPGCTILTVFVAMPQHMWDKLSEDTGNLVKSLVNAPNSLLLGKGAFFIHVNNMIFQVLKDGATLTSTRLEVQSPRIHYVHPSWFEAGKPIDLILCGSSLD
QPKFRSLVSFDGLYLKHDCRRILSHETFDCIGSGEHILDSQHEIFRINITTSKLDTHGPAFVEVENMFGLSNFVPILVGSKHLCSELEQIHDALCGSSDI
SSDPCELRGLRQTAMLGFLIDIGWLIRKPSIDEFQNLLSLANIQRWICMMKFLIQNDFINVLEIIVNSLDNIIGSELLSNLEKGRLENHVTEFLGYVSEA
RNIVDNRPKYDKQRQVDTRWAGDYAPNQPKLGISVPLAESTGTSGEHDLHSTNAASGEEENMPLVTKALPHRQCCHPETSARWLNAASIGAFPGGAMRMR
LATTVVIGAVVCFAACVVLFHPHRVGVLAAPVKRYLSRNYSS

GO Analysis
1
GO Category Biological Process
GO Term biological_process
2
GO Category Molecular Function
GO Term DNA binding
3
GO Category Cellular comBiological Processonent
GO Term nucleus
4
GO Category Biological Process
GO Term biosynthetic process
5
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
6
GO Category Molecular Function
GO Term sequence-specific DNA binding transcription factor activity
Presence of Splice variants No