LOC_Os05g32600

Expression Profile

RGAP LOCUS ID LOC_Os05g32600
RAP-DB ID Os05g0392300
Function cyclin-dependent kinase D-1, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization cyto
score 11

2) CELLO Prediction
localization Cytoplasmic
score 2.229

3) NUCPRED Prediction
localization Non Nuclear
score 0.26

4) Y-Loc Prediction
localization Nuclear
score 56.34
confidence value 0.34
Number Of Software Predicting Nucleus 1
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) R2
Function assigned as per literature R2 Regulates S-Phase Progression
Subcellular localization as per literature Nucleus
Cells used for localization experiment Tobacco protoplasts
NUCLEAR or Not Nuclear NUCLEAR
PMID 11826308
Reference of localization http://www.plantcell.org/content/14/1/197.long
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 2
Number of Bipartite 0
Basic residues % 0.139
NLS score 0.3
Protein Sequence >LOC_Os05g32600.1 protein
MASGDGGDDAGVKRVADRYLKREVLGEGTYGVVFKAVDTKTGNTVAIKKIRLGKYKEGVNFTALREIKLLKELKDSNIIELIDAFPYKGNLHLVFEFMET
DLEAVIRDRNIVLSPADTKSYIQMMLKGLAFCHKKWVLHRDMKPNNLLIGADGQLKLADFGLARIFGSPERNFTHQVFARWYRAPELLFGTKQYGSAVDI
WAAGCIFAELLLRRPFLQGSSDIDQLGKIFAAFGTPKSSQWPDMVYLPDYVEYQFVSAPPLRSLFPMASDDALDLLSRMFTYDPKARITAQQALEHRYFL
SVPAPTKPSQLPRPPPKGDSGNNKIPDLNLQDGPVVLSPPRKLRRVTAHEGMEVHMHRADRTEEHPSGARHMDDMSSQSSRIPMSVDVGAIFGTRPAPRP
TLNSADKSRLKRKLDMDPEFGYTE

GO Analysis
1
GO Category Biological Process
GO Term metabolic process
2
GO Category Biological Process
GO Term cellular process
3
GO Category Cellular comBiological Processonent
GO Term nucleus
4
GO Category Molecular Function
GO Term protein binding
5
GO Category Molecular Function
GO Term kinase activity
6
GO Category Biological Process
GO Term protein modification process
7
GO Category Biological Process
GO Term cell cycle
Presence of Splice variants YES