LOC_Os05g32270

Expression Profile

RGAP LOCUS ID LOC_Os05g32270
RAP-DB ID Os05g0389000
Function AP2 domain containing protein, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 13

2) CELLO Prediction
localization Nuclear
score 2.115

3) NUCPRED Prediction
localization Non Nuclear
score 0.7

4) Y-Loc Prediction
localization Nuclear
score 99.99
confidence value 1
Number Of Software Predicting Nucleus 3
Seed Specific No
Transcription factor category AP2-EREBP

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) SMOS1|SHB|RLA1
Function assigned as per literature RLA1/SMOS1 acts as an integrator of the transcriptional complex directly downstream of GSK2 and plays an essential role in BR signalingand plant development in rice
Subcellular localization as per literature mainly in the nucleus and slightly in the cytoplasm
Cells used for localization experiment Nicotiana benthamiana pavement cells
NUCLEAR or Not Nuclear NUCLEAR
PMID 28100707
Reference of localization http://www.plantcell.org/content/plantcell/29/2/292.full.pdf
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 1
Number of Bipartite 0
Basic residues % 0.115
NLS score -0.04
Protein Sequence >LOC_Os05g32270.1 protein
MESESEQKRETRYTGAYDDEEAAARAYDLAALKYWGAGTQINFPVSDYARDLEEMQMISKEDYLVSLRRKSSAFSRGLPKYRGLPRQLHNSRWDASLGHL
LGNDYMSLGKDITLDGKFAGTFGLERKIDLTNYIRWWLPKKTRQSDTSKMEEVTDEIRAIESSMQRTEPYKFPSLGLHSNSKPSSVVLSACDILSQSDAF
KSFSEKSTKLSEECTFSKEMDEGKTVTPVPATGHDTTAVNMNVNGLLVQRAPYTLPSVTAQMKNTWNPADPSADPLFWTNFILPASQPVTMATIATTTFA
KNEVSSSDPFHGQE

GO Analysis
1
GO Category Molecular Function
GO Term DNA binding
2
GO Category Cellular comBiological Processonent
GO Term nucleus
3
GO Category Biological Process
GO Term biosynthetic process
4
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
5
GO Category Molecular Function
GO Term sequence-specific DNA binding transcription factor activity
Presence of Splice variants YES