| RGAP LOCUS ID |
LOC_Os05g32110 |
| RAP-DB ID |
Os05g0386800 |
| Function |
COBRA, putative, expressed |
Sub-cellular Localization
Predictions |
1) WoLF-PSORT Prediction |
| localization |
golg |
| score |
5.5 |
2) CELLO
Prediction
|
| localization |
Extracellular |
| score |
1.913 |
3) NUCPRED
Prediction
|
| localization |
Non Nuclear |
| score |
0.06 |
4) Y-Loc
Prediction
|
| localization |
Secreted pathw |
| score |
|
| confidence value |
0.45 |
| Number Of Software Predicting Nucleus |
0 |
| Seed Specific |
No |
| Transcription factor category |
|
Experimental evidence for
subcellular localization |
| Published gene name (updated 1 January 2020) |
OsBC1L4 |
| Function assigned as per literature |
OsBC1L4 encodes a COBRA- like protein that affects cellulose synthesis in rice |
| Subcellular localization as per literature |
cell wall and plasma membrane |
| Cells used for localization experiment |
onion epidermal cells |
| NUCLEAR or Not Nuclear |
NOT NUCLEAR |
| PMID |
21264494 |
| Reference of localization |
https://link.springer.com/article/10.1007%2Fs11103-011-9730-z |
| Is Subcellular localization evidence by author available ?
|
No |
Sequence Analysis
|
| Number of PAT4 |
0 |
| Number of PAT7 |
0 |
| Number of Bipartite |
0 |
| Basic residues % |
0.079 |
| NLS score |
-0.47 |
| Protein Sequence |
>LOC_Os05g32110.1 protein
MAVGGAGSSRSVAPCCCCAVLLAAALLFSAPATTEAYDALDPNGNITIKWDVMSWTPDGYVAVVTMFNYQQFRHIQAPGWQLGWTWAKKEVIWSMVGAQT
TEQGDCSKFKGGTPHCCKKDPTVVDLLPGTPYNMQIANCCKAGVINTFNQDPSNAASSFQISVGLAGTTNKTVKLPKNFTLKAPGPGYTCGRAMIVRPTK
FFTGDGRRATQALMTWNVTCTYSQFLAQKTPSCCVSLSSFYNDTIVNCPTCSCGCQNNGTSPGSCVNENSPYLQSAIDGPGKWTGQPLVQCTSHMCPIRI
HWHVKLNYKEYWRVKITITNFNYRMNYTQWNLVAQHPNFNNITQLFSFNYKPLTPYGSKINDTAMFWGVKFYNDLLMQAGPLGNAQSELLLRKDSKDFTF
DKGWAFPHRVYFNGDNCVMPPPDAYPWLPNASPLTKQPLTLSVLVFSIVLATLLAYA |
GO Analysis |
| 1 |
| GO Category |
Biological Process |
| GO Term |
cellular component organization |
|
| 2 |
| GO Category |
Biological Process |
| GO Term |
cellular process |
|
| 3 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
plasma membrane |
|
| 4 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
membrane |
|
| 5 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
cell |
|
| 6 |
| GO Category |
Molecular Function |
| GO Term |
molecular_function |
|
| 7 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
cell wall |
|
| 8 |
| GO Category |
Biological Process |
| GO Term |
cell growth |
|
| 9 |
| GO Category |
Biological Process |
| GO Term |
response to stress |
|
| 10 |
| GO Category |
Biological Process |
| GO Term |
response to abiotic stimulus |
|
| Presence of Splice variants |
YES |
