LOC_Os05g30970

Expression Profile

RGAP LOCUS ID LOC_Os05g30970
RAP-DB ID Os05g0373300
Function copine, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 11

2) CELLO Prediction
localization PlasmaMembrane
score 1.544

3) NUCPRED Prediction
localization Non Nuclear
score 0.2

4) Y-Loc Prediction
localization Cytoplasm
score 95
confidence value 0.55
Number Of Software Predicting Nucleus 1
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsBON3
Function assigned as per literature OsBON3 function as suppressors of broad-spectrum disease resistance
Subcellular localization as per literature Plasma membrane but forms punctate aggregates in the plasma membrane and cytosol after pathogen infection
Cells used for localization experiment Rice protoplasts, Nicotiana benthamiana leaves and stable rice transgenic line
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 29356349
Reference of localization https://onlinelibrary.wiley.com/doi/epdf/10.1111/pbi.12890
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.084
NLS score -0.47
Protein Sequence >LOC_Os05g30970.1 protein
MGGCLSGDVRGGMEAVGGSGGRGAAGTGGGGGGGAGQGGGANEAVDHFFNAAGLRGLYSPLELSFSASKLRNMDAFSKSDPMLVIYIRKDARLEEIGRTE
VILNSLEPSWITKATISYQFEIIQPLVFKIYDIDTRYHNTPVKTLNLAQQDFLGEACCNLSEIVTNNHSLTLNLRDSCGHTLLGTVTVHAEESNSSRMAV
EMTLHALNLENKDVFSKSDPFLRISRLVETAGPIPICKTEVISNNLNPVWRPIILTSQQFGSKDNPLLVECFDFDSSGDHELIGTFQTTITQLENVYNSK
SGANFFSHKGQKKLKGQLFVDKFQEKVQHTFLDYISSGFELNFMVAVDFTASNGDPRSPQSLHYIDPSGRPNSYQQAILGVGEVLQFYDNDRRFPAWGFG
AKTPQGYISHCFNLNATTNDCEVVGVEGIMSAYTSTLYSVTLAGPTLFGPIINKAAEIASHSLQYGNNKYFVLLIITDGVLTDIQETKDSIVRASDLPLS
ILIVGVGNADFKQMEILDGDNGKRLESSTGRIATRDIVQFVPMRDVQGGQISVVQSLLEELPGQFLAYMRSRDIKPRAPLQHDNASSAPPLYPPTK

GO Analysis
1
GO Category Biological Process
GO Term cellular homeostasis
2
GO Category Molecular Function
GO Term lipid binding
3
GO Category Biological Process
GO Term biosynthetic process
4
GO Category Biological Process
GO Term protein modification process
5
GO Category Biological Process
GO Term response to stress
6
GO Category Biological Process
GO Term cell death
Presence of Splice variants No