LOC_Os05g30220

Expression Profile

RGAP LOCUS ID LOC_Os05g30220
RAP-DB ID Os05g0365300
Function disease resistance RPP13-like protein 1, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization cyto
score 7

2) CELLO Prediction
localization Nuclear
score 2.585

3) NUCPRED Prediction
localization Non Nuclear
score 0.67

4) Y-Loc Prediction
localization Nuclear
score 51.25
confidence value 0.15
Number Of Software Predicting Nucleus 2
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) DEPG1
Function assigned as per literature DEPG1 plays roles in the interactions between rice and bacterial leaf streak (BLS) pathogen X. oryzae pv. oryzicola (Xoc)
Subcellular localization as per literature Cytoplasm
Cells used for localization experiment Onion epidermal cells
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 21717056
Reference of localization https://link.springer.com/article/10.1007%2Fs11033-011-1122-6
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.136
NLS score -0.47
Protein Sequence >LOC_Os05g30220.1 protein
MAEVALASLRLAASPILNKLLADASTYLGVDMASELRELETSIMPQFELLIEEAEKGNHRAKLDKWIRELKEALYNAEDLLDEHEYDILKRKVKNGGEDP
SPDLEHASSIGSIIKKPMRAASSSLSNLRPKNIKLVRQLKELKAILAKARDFREMLGLPAGSSVEGAQTGHTKTVVVTAATSTPPPKVFGRDADRDRIVD
LLTQHKTCAEASRFVVSIVGPGGMGKSTLAQYVYNDKTIQEHFDVTMWVCISRKLDVHRHTREIIESATKEKCQRVGNMDVLQYKLKEILQKKEKVLLVL
DDIWFDKSQDVEEWDLLLAPILSSQNGATKVLVTSRSKTLPPALFSEDVIDLENMKDTEFQALFKHHAFSGATIRDLQMCGWFEEHAVKITERLGRSPLA
AKVVGSNLKRVMNIDDWKGALTIKIDNLSEPKRALLWSYQKLDPCLQRCFLYCSLFPKGYKYIIDELVHLWVAEGFIDARDTNKRMEDTGMDYFKEMVSG
SFFQPFSERFDSTVYIMHDLLHDLAESLSREDCFRLEDDKVREIPCTVRHLSVRVESIIQHKPSVCKLQHLRTLICIDPLVDVGSNIFEQVVLNLKKLQV
LYLSFYNTRKLPESIGQLKHLRYLNIKKTLISELPKSLCDLYHLELLYLRPKSRLPDKLCNLCKLRHLQMYSDGLELSRIPDIGRLTLLQRIDSFHVLKQ
KGHELRQLRNMNEIGGYLSLRNLENVIGKDEALESKLYQKSRLEGLTLEWNDANNMNPENCLHVEILEGLVPPPQLEHLSIRGYKSTTYPSWLLEGSQLE
NLESFALYNCSALERLPSNTKLFRRCRELSLKNLPNMKELSFLPAGLTTLSIRRCPLLLFVTNDELEYHDHSEHIH

GO Analysis
1
GO Category Molecular Function
GO Term nucleotide binding
2
GO Category Biological Process
GO Term response to stress
Presence of Splice variants No