LOC_Os05g28510

Expression Profile

RGAP LOCUS ID LOC_Os05g28510
RAP-DB ID Os05g0353400
Function importin subunit beta, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization chlo
score 5

2) CELLO Prediction
localization PlasmaMembrane
score 1.164

3) NUCPRED Prediction
localization Non Nuclear
score 0.14

4) Y-Loc Prediction
localization Cytoplasm
score 86
confidence value 0.72
Number Of Software Predicting Nucleus 0
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsImpbeta1
Function assigned as per literature OsImpβ1 is specifically required for pollen tube elongation
Subcellular localization as per literature nucleus
Cells used for localization experiment mesophyll cells
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 21499832
Reference of localization https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3887616/
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.078
NLS score -0.47
Protein Sequence >LOC_Os05g28510.4 protein
MNITQILLSAQSADGNLRVVAEGNLKQFQEQNLPNFLLSLSVELSDNEKPPESRRLAGIILKNSLDAKDSAKKELLIQQWVSLDPSIKQKIKESLLITLG
SSVHDARHTSSQVIAKVASIEIPRREWQELIAKLLGNMTQQGAPAPLKQATLEALGYVCEEISPEHLEQDQVNAVLTAVVQGMNQTELSPEVRLAAVKAL
YNALDFAESNFANEMERNYIMKVICDTAVSKEVEIRQAAFECLVAIASTYYVHLDPYMQTIFNLTANAVKGDEEAVALQAIEFWSTICDEEIELQEEYEG
SDDANSTVNYRFIEKALPSLVPMLLETLLKQEEDQDQDDNVWNISMSGGTCLGLIARTVGDAIVPLVMPFVEGNITKPDWHCREAATFAFGSILEGPSVE
KLAPLVQAGFDFLLNTTKDPNSQVRDTTAWTLGRVFELLHSPASANPIITSANLTRIMTVLLESSKDVPNVAEKVCGAIYFLAQGYEDAESISSVLTPFL
PNLIAALLSAADRADTTHFRLRASAYEALNEIVRVSNISETSGIIGQLLQEIMRRLNLTFDLHILSSGDKEKQSDLQALLCGVLQVIIQKLSSSDAKSII
AQTADQLMFLFLHVFACHSSTVHEEAMLAIGALAYATGTDFVKYMPEFFKYLEAGLQNYEEYQVCSISVGVVGDICRALEDKILPFCDGIMTVLLKDLSN
SMLNRSVKPPIFSCFGDIALAIGDNFEKYLPYAMPMLQGAAELLAVLDHTDEDMVDYGNQLRRGIFEAYSGILQGIKGAKAQLMIPYASHLLQFTEAVYK
DRSRDESVTKAAVAVLGDLADTLGSSSKDLFKSNLFHVEFLRECHDLDDEVRDTASWAQGMINQALVS

GO Analysis
1
GO Category Biological Process
GO Term transport
2
GO Category Biological Process
GO Term cellular process
3
GO Category Molecular Function
GO Term transporter activity
4
GO Category Cellular comBiological Processonent
GO Term cytosol
5
GO Category Molecular Function
GO Term binding
Presence of Splice variants YES