LOC_Os05g28350

Expression Profile

RGAP LOCUS ID LOC_Os05g28350
RAP-DB ID Os05g0351200
Function AP2 domain containing protein, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 12

2) CELLO Prediction
localization Nuclear
score 3.427

3) NUCPRED Prediction
localization Non Nuclear
score 0.59

4) Y-Loc Prediction
localization Nuclear
score 99.97
confidence value 0.84
Number Of Software Predicting Nucleus 3
Seed Specific No
Transcription factor category AP2-EREBP/ERF

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsABI4
Function assigned as per literature Interactions of OsTCP19 with OsABI4 a suggest its function in modulation of abscisic acid pathways
Subcellular localization as per literature Nucleus when interacted with OsTCP19
Cells used for localization experiment Onion epidermal cells
NUCLEAR or Not Nuclear NUCLEAR
PMID 25925167
Reference of localization https://www.nature.com/articles/srep09998
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 1
Number of PAT7 1
Number of Bipartite 1
Basic residues % 0.086
NLS score 0.7
Protein Sequence >LOC_Os05g28350.1 protein
MEPSDDACTVAAPAAETAASSSGAGGGGGGGRTKKKAAGKGGPENGKFRYRGVRQRSWGKWVAEIREPRKRSRKWLGTFATAEDAARAYDRAALLLYGPR
AHLNLTAPPPLPPPPPSSAAAAAASSSSAASSTSAPPLRPLLPRPPHLHPAFHHQPFHHHLLQPQPPPPPPPLYYAATASTSTVTTTTTAPPPQLAAAAP
AAVLVAAAVSSTAETQAVVATAPEDAASAAAAAAAEEEAAWGFHGGDEEDYAAALLWSEPDPWFDLFLK

GO Analysis
1
GO Category Molecular Function
GO Term DNA binding
2
GO Category Biological Process
GO Term catabolic process
3
GO Category Biological Process
GO Term cellular process
4
GO Category Biological Process
GO Term lipid metabolic process
5
GO Category Biological Process
GO Term response to endogenous stimulus
6
GO Category Biological Process
GO Term signal transduction
7
GO Category Biological Process
GO Term response to stress
8
GO Category Biological Process
GO Term response to abiotic stimulus
9
GO Category Biological Process
GO Term biosynthetic process
10
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
11
GO Category Biological Process
GO Term reproduction
12
GO Category Biological Process
GO Term post-embryonic development
13
GO Category Biological Process
GO Term biological_process
14
GO Category Molecular Function
GO Term sequence-specific DNA binding transcription factor activity
15
GO Category Cellular comBiological Processonent
GO Term nucleus
16
GO Category Biological Process
GO Term carbohydrate metabolic process
Presence of Splice variants No