LOC_Os05g27730

Expression Profile

RGAP LOCUS ID LOC_Os05g27730
RAP-DB ID Os05g0343400
Function WRKY53, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 13

2) CELLO Prediction
localization Nuclear
score 3.761

3) NUCPRED Prediction
localization Non Nuclear
score 0.46

4) Y-Loc Prediction
localization Nuclear
score 96.51
confidence value 0.23
Number Of Software Predicting Nucleus 3
Seed Specific No
Transcription factor category WRKY

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsWRKY53
Function assigned as per literature repress abscisic acid and gibberellin signaling in aleurone cells
Subcellular localization as per literature Nucleus
Cells used for localization experiment barley aleurone cell
NUCLEAR or Not Nuclear NUCLEAR
PMID 26025535
Reference of localization https://www.sciencedirect.com/science/article/pii/S0168945215001144
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 1
Number of Bipartite 0
Basic residues % 0.111
NLS score -0.22
Protein Sequence >LOC_Os05g27730.1 protein
MASSTGGLDHGFTFTPPPFITSFTELLSGGGGDLLGAGGEERSPRGFSRGGARVGGGVPKFKSAQPPSLPLSPPPVSPSSYFAIPPGLSPTELLDSPVLL
SSSHILASPTTGAIPAQRYDWKASADLIASQQDDSRGDFSFHTNSDAMAAQPASFPSFKEQEQQVVESSKNGAAAASSNKSGGGGNNKLEDGYNWRKYGQ
KQVKGSENPRSYYKCTYNGCSMKKKVERSLADGRITQIVYKGAHNHPKPLSTRRNASSCATAAACADDLAAPGAGADQYSAATPENSSVTFGDDEADNAS
HRSEGDEPEAKRWKEDADNEGSSGGMGGGAGGKPVREPRLVVQTLSDIDILDDGFRWRKYGQKVVKGNPNPRSYYKCTTVGCPVRKHVERASHDTRAVIT
TYEGKHNHDVPVGRGGGGGRAPAPAPPTSGAIRPSAVAAAQQGPYTLEMLPNPAGLYGGYGAGAGGAAFPRTKDERRDDLFVESLLC

GO Analysis
1
GO Category Biological Process
GO Term response to stress
2
GO Category Biological Process
GO Term response to abiotic stimulus
3
GO Category Biological Process
GO Term cellular process
4
GO Category Biological Process
GO Term biosynthetic process
5
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
6
GO Category Molecular Function
GO Term sequence-specific DNA binding transcription factor activity
Presence of Splice variants No